Zinc in PDB 3rza: Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution

The structure of Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution, PDB code: 3rza was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.52 / 2.10
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	46.996, 57.805, 79.857, 89.67, 73.38, 72.36
R / Rfree (%)	16.7 / 21.2

The structure of Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution also contains other interesting chemical elements:

Calcium

(Ca)

5 atoms

The binding sites of Zinc atom in the Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution (pdb code 3rza). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution, PDB code: 3rza:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:26.6 occ:1.00 OD1 A:ASP110 2.1 17.8 1.0 O A:HOH417 2.1 33.9 1.0 NE2 A:HIS79 2.1 21.0 1.0 OD1 A:ASP167 2.1 18.1 1.0 OD2 A:ASP167 2.7 17.9 1.0 CG A:ASP167 2.8 18.9 1.0 CG A:ASP110 3.1 19.6 1.0 CD2 A:HIS79 3.1 18.2 1.0 CE1 A:HIS79 3.1 19.8 1.0 OD2 A:ASP110 3.4 23.8 1.0 CA A:CA402 3.6 32.3 1.0 OE1 A:GLU143 3.7 21.8 1.0 CB A:ASP111 3.9 15.3 1.0 OH A:TYR343 4.0 17.2 1.0 OE2 A:GLU144 4.0 23.4 1.0 CD A:GLU143 4.1 22.6 1.0 CG A:ASP111 4.2 18.7 1.0 OE2 A:GLU143 4.2 32.8 1.0 ND1 A:HIS79 4.2 21.3 1.0 CG A:HIS79 4.2 19.3 1.0 CB A:ASP167 4.3 19.2 1.0 CB A:ASP110 4.4 18.7 1.0 O A:HOH748 4.5 38.2 1.0 O A:HOH735 4.5 42.2 1.0 OD1 A:ASP111 4.6 15.8 1.0 OD2 A:ASP111 4.6 20.1 1.0 CA A:ASP111 4.7 15.6 1.0 C A:ASP110 4.7 17.1 1.0 CZ A:TYR343 4.7 16.4 1.0 O A:ASP167 4.7 18.3 1.0 CA A:ASP110 4.7 17.3 1.0 CD A:GLU144 4.7 26.1 1.0 N A:ASP111 4.8 17.9 1.0 CE2 A:TYR343 4.9 16.6 1.0 CA A:ASP167 5.0 18.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Tripeptidase (SAV1512) From Staphylococcus Aureus Subsp. Aureus MU50 at 2.10 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:35.0 occ:1.00 OD1 B:ASP167 2.0 20.9 1.0 OD1 B:ASP110 2.1 18.6 1.0 NE2 B:HIS79 2.2 22.7 1.0 O B:HOH418 2.2 37.6 1.0 CG B:ASP167 2.7 22.8 1.0 OD2 B:ASP167 2.8 22.9 1.0 CD2 B:HIS79 3.0 21.4 1.0 CG B:ASP110 3.2 18.8 1.0 CE1 B:HIS79 3.2 23.3 1.0 CA B:CA402 3.5 38.5 1.0 OD2 B:ASP110 3.5 26.4 1.0 OE1 B:GLU143 3.7 29.2 1.0 OH B:TYR343 3.9 21.5 1.0 CB B:ASP111 3.9 22.1 1.0 OE2 B:GLU144 4.1 26.7 1.0 CD B:GLU143 4.1 24.8 1.0 OE2 B:GLU143 4.2 35.6 1.0 CB B:ASP167 4.2 20.5 1.0 CG B:HIS79 4.2 22.0 1.0 CG B:ASP111 4.2 24.8 1.0 ND1 B:HIS79 4.3 24.0 1.0 CB B:ASP110 4.5 20.1 1.0 O B:HOH796 4.5 41.2 1.0 OD2 B:ASP111 4.6 28.6 1.0 CZ B:TYR343 4.7 19.1 1.0 O B:ASP167 4.7 19.2 1.0 OD1 B:ASP111 4.7 22.4 1.0 C B:ASP110 4.7 20.4 1.0 CA B:ASP110 4.7 20.6 1.0 CA B:ASP111 4.8 19.1 1.0 CD B:GLU144 4.8 32.7 1.0 N B:ASP111 4.8 20.4 1.0 CE2 B:TYR343 4.9 17.0 1.0 CA B:ASP167 4.9 20.5 1.0 O B:HOH587 5.0 30.4 1.0 O B:HOH718 5.0 39.1 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.