Zinc in PDB 3mp2: Crystal Structure of Transmissible Gastroenteritis Virus Papain-Like Protease 1

The structure of Crystal Structure of Transmissible Gastroenteritis Virus Papain-Like Protease 1, PDB code: 3mp2 was solved by J.A.Wojdyla, I.Manolaridis, P.A.Tucker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.15 / 2.50
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	62.510, 62.510, 199.420, 90.00, 90.00, 90.00
R / Rfree (%)	17.3 / 22.3

The binding sites of Zinc atom in the Crystal Structure of Transmissible Gastroenteritis Virus Papain-Like Protease 1 (pdb code 3mp2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Transmissible Gastroenteritis Virus Papain-Like Protease 1, PDB code: 3mp2:

Zinc binding site 1 out of 1 in the Crystal Structure of Transmissible Gastroenteritis Virus Papain-Like Protease 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Transmissible Gastroenteritis Virus Papain-Like Protease 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1 b:34.1 occ:1.00 SG A:CYS131 2.3 33.6 1.0 SG A:CYS134 2.3 31.6 1.0 SG A:CYS105 2.3 33.9 1.0 SG A:CYS103 2.3 31.4 1.0 CB A:CYS131 3.1 31.9 1.0 CB A:CYS105 3.2 33.7 1.0 CB A:CYS134 3.3 28.4 1.0 N A:CYS105 3.4 34.7 1.0 CB A:CYS103 3.4 33.2 1.0 N A:CYS134 3.6 31.9 1.0 N A:GLY104 3.9 34.4 1.0 CA A:CYS105 3.9 34.7 1.0 CA A:CYS134 4.1 30.1 1.0 C A:GLY104 4.3 34.9 1.0 C A:CYS103 4.5 33.8 1.0 C A:ASP133 4.5 34.6 1.0 CA A:GLY104 4.5 34.4 1.0 CA A:CYS131 4.5 32.7 1.0 CA A:CYS103 4.6 32.8 1.0 CB A:ASP133 4.6 36.4 1.0 C A:CYS131 4.9 33.0 1.0 N A:ASP133 4.9 35.0 1.0 CA A:ASP133 4.9 36.0 1.0 O A:CYS131 5.0 34.4 1.0

J.A.Wojdyla, I.Manolaridis, P.B.Van Kasteren, M.Kikkert, E.J.Snijder, A.E.Gorbalenya, P.A.Tucker. Papain-Like Protease 1 From Transmissible Gastroenteritis Virus: Crystal Structure and Enzymatic Activity Toward Viral and Cellular Substrates. J.Virol. V. 84 10063 2010.
ISSN: ISSN 0022-538X
PubMed: 20668092
DOI: 10.1128/JVI.00898-10