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Zinc in PDB 3miv: Structure of Banana Lectin - Glc-Alpha(1,2)-Glc Complex

Protein crystallography data

The structure of Structure of Banana Lectin - Glc-Alpha(1,2)-Glc Complex, PDB code: 3miv was solved by A.Sharma, M.Vijayan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 9.99 / 3.50
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 82.569, 82.569, 149.446, 90.00, 90.00, 120.00
R / Rfree (%) 21.7 / 26.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Banana Lectin - Glc-Alpha(1,2)-Glc Complex (pdb code 3miv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Banana Lectin - Glc-Alpha(1,2)-Glc Complex, PDB code: 3miv:

Zinc binding site 1 out of 1 in 3miv

Go back to Zinc Binding Sites List in 3miv
Zinc binding site 1 out of 1 in the Structure of Banana Lectin - Glc-Alpha(1,2)-Glc Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Banana Lectin - Glc-Alpha(1,2)-Glc Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn902

b:31.5
occ:1.00
OD2 B:ASP41 2.2 26.9 1.0
ND1 B:HIS54 2.2 40.2 1.0
OD1 B:ASP41 2.5 26.1 1.0
CG B:ASP41 2.7 27.4 1.0
CE1 B:HIS54 3.0 40.0 1.0
CG B:HIS54 3.3 40.8 1.0
CB B:HIS54 3.8 41.6 1.0
NE2 B:HIS54 4.1 39.5 1.0
CB B:ASP41 4.2 28.3 1.0
CD2 B:HIS54 4.3 40.2 1.0
CE2 B:PHE32 4.4 37.0 1.0
CA B:HIS54 4.5 41.8 1.0
CZ B:PHE32 4.6 36.6 1.0

Reference:

A.Sharma, M.Vijayan. Influence of Glycosidic Linkage on the Nature of Carbohydrate Binding in Beta-Prism I Fold Lectins: An X-Ray and Molecular Dynamics Investigation on Banana Lectin-Carbohydrate Complexes Glycobiology V. 21 23 2011.
ISSN: ISSN 0959-6658
PubMed: 20729346
DOI: 10.1093/GLYCOB/CWQ128
Page generated: Wed Dec 16 04:35:19 2020

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