Zinc in PDB 3mit: Structure of Banana Lectin-Alpha-D-Mannose Complex

The structure of Structure of Banana Lectin-Alpha-D-Mannose Complex, PDB code: 3mit was solved by A.Sharma, M.Vijayan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.46 / 2.32
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	80.926, 80.926, 148.173, 90.00, 90.00, 120.00
R / Rfree (%)	20.3 / 24.6

The binding sites of Zinc atom in the Structure of Banana Lectin-Alpha-D-Mannose Complex (pdb code 3mit). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Banana Lectin-Alpha-D-Mannose Complex, PDB code: 3mit:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Banana Lectin-Alpha-D-Mannose Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Banana Lectin-Alpha-D-Mannose Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn903 b:62.4 occ:0.50 O A:HOH198 2.2 44.8 1.0 OE1 A:GLU64 2.2 55.2 1.0 CD A:GLU64 2.9 50.6 1.0 OE2 A:GLU64 3.0 52.0 1.0 O A:HOH202 3.2 42.6 1.0 CE A:LYS30 3.9 49.9 1.0 NZ A:LYS30 4.0 52.3 1.0 O A:HOH197 4.2 63.4 1.0 O A:HOH201 4.2 48.2 1.0 CG A:GLU64 4.2 48.4 1.0 CB A:GLU64 4.7 48.5 1.0

Zinc binding site 2 out of 2 in the Structure of Banana Lectin-Alpha-D-Mannose Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Banana Lectin-Alpha-D-Mannose Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn902 b:39.2 occ:0.70 OD1 B:ASP41 1.9 46.9 1.0 O B:HOH168 2.1 47.5 1.0 ND1 B:HIS54 2.2 52.9 1.0 CG B:ASP41 2.5 47.6 1.0 OD2 B:ASP41 2.5 45.6 1.0 CE1 B:HIS54 3.1 54.1 1.0 CG B:HIS54 3.2 52.4 1.0 CB B:HIS54 3.6 51.6 1.0 CB B:ASP41 4.0 47.4 1.0 CE2 B:PHE32 4.0 50.2 1.0 NE2 B:HIS54 4.2 55.1 1.0 CA B:HIS54 4.2 49.8 1.0 CZ B:PHE32 4.3 51.4 1.0 CD2 B:HIS54 4.3 53.3 1.0 O B:HOH230 4.5 44.6 1.0 CA B:ASP41 4.9 45.5 1.0 CD2 B:PHE32 4.9 47.8 1.0

A.Sharma, M.Vijayan. Influence of Glycosidic Linkage on the Nature of Carbohydrate Binding in Beta-Prism I Fold Lectins: An X-Ray and Molecular Dynamics Investigation on Banana Lectin-Carbohydrate Complexes Glycobiology V. 21 23 2011.
ISSN: ISSN 0959-6658
PubMed: 20729346
DOI: 10.1093/GLYCOB/CWQ128