Atomistry » Zinc » PDB 3l2r-3ljg » 3l9e
Atomistry »
  Zinc »
    PDB 3l2r-3ljg »
      3l9e »

Zinc in PDB 3l9e: Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis

Enzymatic activity of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis

All present enzymatic activity of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis:
1.15.1.1;

Protein crystallography data

The structure of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis, PDB code: 3l9e was solved by N.-N.Zhang, Y.-X.He, W.-F.Li, F.Zhao, L.-F.Yan, G.-Z.Zhang, Y.-B.Teng, J.Yu, Y.Chen, C.-Z.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.00 / 2.05
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 118.470, 118.470, 81.790, 90.00, 90.00, 120.00
R / Rfree (%) 20.1 / 24.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis (pdb code 3l9e). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis, PDB code: 3l9e:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 3l9e

Go back to Zinc Binding Sites List in 3l9e
Zinc binding site 1 out of 4 in the Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn155

b:17.6
occ:1.00
 OD1 A:ASP82 2.0 13.9 1.0
ND1 A:HIS62 2.0 12.9 1.0
ND1 A:HIS70 2.1 15.6 1.0
ND1 A:HIS79 2.1 14.7 1.0
CG A:ASP82 2.8 14.7 1.0
CE1 A:HIS70 2.9 15.6 1.0
CE1 A:HIS62 3.0 12.9 1.0
CE1 A:HIS79 3.0 15.5 1.0
OD2 A:ASP82 3.0 14.3 1.0
CG A:HIS62 3.0 14.4 1.0
CG A:HIS79 3.2 14.4 1.0
CG A:HIS70 3.2 15.4 1.0
CB A:HIS62 3.4 14.9 1.0
CB A:HIS79 3.6 14.2 1.0
CB A:HIS70 3.7 16.4 1.0
O A:THR136 3.9 17.7 1.0
CA A:HIS70 4.0 16.5 1.0
NE2 A:HIS62 4.1 13.5 1.0
NE2 A:HIS70 4.1 15.3 1.0
NE2 A:HIS79 4.1 14.8 1.0
CD2 A:HIS62 4.1 13.6 1.0
CD2 A:HIS79 4.2 14.4 1.0
CB A:ASP82 4.2 14.9 1.0
CD2 A:HIS70 4.3 15.1 1.0
O A:HOH197 4.5 17.1 1.0
CA A:ASP82 4.7 15.0 1.0
N A:GLY71 4.7 16.3 1.0
N A:HIS79 4.7 14.4 1.0
CA A:HIS79 4.8 14.3 1.0
C A:THR136 4.9 18.0 1.0
C A:HIS70 4.9 16.4 1.0
CD2 A:HIS45 4.9 15.9 1.0
N A:ASP82 4.9 15.0 1.0
CA A:HIS62 4.9 15.2 1.0
N A:HIS70 4.9 16.9 1.0
O A:GLY71 5.0 17.1 1.0

Zinc binding site 2 out of 4 in 3l9e

Go back to Zinc Binding Sites List in 3l9e
Zinc binding site 2 out of 4 in the Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn155

b:19.6
occ:1.00
 OD1 B:ASP82 1.9 13.2 1.0
ND1 B:HIS79 2.1 13.8 1.0
ND1 B:HIS70 2.1 18.0 1.0
ND1 B:HIS62 2.2 14.6 1.0
CG B:ASP82 2.7 14.4 1.0
OD2 B:ASP82 2.8 14.3 1.0
CE1 B:HIS79 2.9 14.0 1.0
CE1 B:HIS70 3.0 17.4 1.0
CG B:HIS62 3.1 14.7 1.0
CG B:HIS79 3.1 14.9 1.0
CE1 B:HIS62 3.2 14.4 1.0
CG B:HIS70 3.2 17.9 1.0
CB B:HIS62 3.4 14.1 1.0
CB B:HIS79 3.6 14.7 1.0
CB B:HIS70 3.6 17.7 1.0
CA B:HIS70 3.9 17.8 1.0
O B:THR136 4.0 18.0 1.0
NE2 B:HIS79 4.0 14.7 1.0
CB B:ASP82 4.1 14.9 1.0
NE2 B:HIS70 4.2 17.8 1.0
CD2 B:HIS79 4.2 14.1 1.0
CD2 B:HIS62 4.3 14.1 1.0
NE2 B:HIS62 4.3 15.1 1.0
CD2 B:HIS70 4.3 16.5 1.0
N B:GLY71 4.6 17.4 1.0
N B:HIS79 4.6 15.2 1.0
CA B:ASP82 4.6 15.0 1.0
O B:HOH162 4.7 14.2 1.0
CA B:HIS79 4.7 14.8 1.0
CD2 B:HIS45 4.8 14.1 1.0
C B:HIS70 4.9 17.6 1.0
N B:ASP82 4.9 14.8 1.0
CA B:HIS62 4.9 14.0 1.0
O B:GLY71 4.9 17.5 1.0
N B:HIS70 5.0 18.0 1.0

Zinc binding site 3 out of 4 in 3l9e

Go back to Zinc Binding Sites List in 3l9e
Zinc binding site 3 out of 4 in the Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn155

b:19.9
occ:1.00
 OD1 C:ASP82 2.0 15.2 1.0
ND1 C:HIS62 2.1 15.7 1.0
ND1 C:HIS70 2.1 17.8 1.0
ND1 C:HIS79 2.1 17.5 1.0
CG C:ASP82 2.8 16.0 1.0
OD2 C:ASP82 2.9 15.3 1.0
CE1 C:HIS79 3.0 17.9 1.0
CE1 C:HIS70 3.0 17.1 1.0
CE1 C:HIS62 3.0 16.4 1.0
CG C:HIS62 3.1 15.6 1.0
CG C:HIS70 3.1 17.6 1.0
CG C:HIS79 3.2 17.5 1.0
CB C:HIS62 3.4 15.9 1.0
CB C:HIS70 3.5 17.9 1.0
CB C:HIS79 3.6 16.8 1.0
O C:THR136 3.8 20.3 1.0
CA C:HIS70 3.9 18.2 1.0
NE2 C:HIS79 4.1 17.7 1.0
NE2 C:HIS62 4.1 16.5 1.0
NE2 C:HIS70 4.1 17.4 1.0
CD2 C:HIS62 4.2 15.5 1.0
CB C:ASP82 4.2 16.1 1.0
CD2 C:HIS79 4.2 16.9 1.0
CD2 C:HIS70 4.2 17.1 1.0
O C:HOH160 4.6 15.8 1.0
N C:HIS79 4.7 17.2 1.0
N C:GLY71 4.7 18.0 1.0
CA C:ASP82 4.7 16.2 1.0
CA C:HIS79 4.8 17.1 1.0
C C:THR136 4.8 21.1 1.0
C C:HIS70 4.9 18.1 1.0
N C:HIS70 4.9 18.6 1.0
CA C:HIS62 4.9 15.9 1.0
CD2 C:HIS45 5.0 16.5 1.0

Zinc binding site 4 out of 4 in 3l9e

Go back to Zinc Binding Sites List in 3l9e
Zinc binding site 4 out of 4 in the Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structures of Holo and Cu-Deficient Cu/Znsod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn155

b:17.2
occ:1.00
 ND1 D:HIS70 2.0 14.2 1.0
ND1 D:HIS79 2.0 15.5 1.0
OD1 D:ASP82 2.0 13.4 1.0
ND1 D:HIS62 2.1 15.3 1.0
CG D:ASP82 2.8 15.1 1.0
CE1 D:HIS79 2.9 15.1 1.0
OD2 D:ASP82 2.9 13.9 1.0
CE1 D:HIS70 2.9 14.0 1.0
CE1 D:HIS62 3.1 15.2 1.0
CG D:HIS62 3.1 15.5 1.0
CG D:HIS70 3.1 15.3 1.0
CG D:HIS79 3.1 16.2 1.0
CB D:HIS62 3.4 14.9 1.0
CB D:HIS70 3.5 15.9 1.0
CB D:HIS79 3.6 15.8 1.0
O D:THR136 3.9 19.2 1.0
CA D:HIS70 3.9 16.2 1.0
NE2 D:HIS79 4.0 15.3 1.0
NE2 D:HIS70 4.1 13.6 1.0
CD2 D:HIS79 4.1 15.1 1.0
NE2 D:HIS62 4.2 15.8 1.0
CD2 D:HIS70 4.2 13.0 1.0
CD2 D:HIS62 4.2 15.9 1.0
CB D:ASP82 4.3 15.8 1.0
O D:HOH162 4.7 10.0 1.0
N D:GLY71 4.7 15.5 1.0
CA D:ASP82 4.8 15.8 1.0
N D:HIS79 4.8 16.1 1.0
CA D:HIS79 4.8 16.0 1.0
CD2 D:HIS45 4.9 14.1 1.0
C D:HIS70 4.9 15.9 1.0
CA D:HIS62 4.9 15.3 1.0
C D:THR136 4.9 19.5 1.0
N D:HIS70 4.9 17.2 1.0
O D:GLY71 5.0 14.9 1.0

Reference:

N.-N.Zhang, Y.-X.He, W.-F.Li, Y.-B.Teng, J.Yu, Y.Chen, C.-Z.Zhou. Crystal Structures of Holo and Cu-Deficient Cu/Zn-Sod From the Silkworm Bombyx Mori and the Implications in Amyotrophic Lateral Sclerosis Proteins V. 78 1999 2010.
ISSN: ISSN 0887-3585
PubMed: 20310068
DOI: 10.1002/PROT.22709
Page generated: Sat Oct 26 08:26:02 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy