Zinc in PDB 3jyg: Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes

The structure of Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes, PDB code: 3jyg was solved by U.A.Ramagopal, R.Toro, S.K.Burley, S.C.Almo, New York Sgx Research Centerfor Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.95
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	95.838, 80.949, 104.614, 90.00, 113.24, 90.00
R / Rfree (%)	19.2 / 23.3

The binding sites of Zinc atom in the Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes (pdb code 3jyg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes, PDB code: 3jyg:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn200 b:28.8 occ:1.00 NE2 A:HIS38 2.2 14.1 1.0 NE2 A:HIS40 2.2 18.5 1.0 NE2 A:HIS15 2.3 22.1 1.0 O A:HOH714 2.4 23.9 1.0 O A:HOH217 2.5 34.6 1.0 CD2 A:HIS38 3.1 16.5 1.0 CD2 A:HIS40 3.1 16.7 1.0 CE1 A:HIS38 3.2 17.4 1.0 CE1 A:HIS40 3.2 17.0 1.0 CE1 A:HIS15 3.3 21.3 1.0 CD2 A:HIS15 3.3 18.4 1.0 SG A:CYS34 3.6 35.9 1.0 OE2 A:GLU168 4.2 36.4 1.0 ND1 A:HIS38 4.3 16.0 1.0 CG A:HIS38 4.3 14.2 1.0 ND1 A:HIS40 4.3 15.6 1.0 CG A:HIS40 4.3 16.4 1.0 CD A:GLU168 4.4 36.9 1.0 ND1 A:HIS15 4.4 20.8 1.0 CG A:HIS15 4.5 18.2 1.0 CG2 A:VAL17 4.6 18.1 1.0 CG A:GLU168 4.6 30.8 1.0 OE1 A:GLU168 4.8 40.5 1.0 O A:HOH203 5.0 26.7 1.0

Zinc binding site 2 out of 6 in the Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn200 b:27.2 occ:1.00 NE2 B:HIS40 2.1 15.0 1.0 NE2 B:HIS15 2.3 12.7 1.0 NE2 B:HIS38 2.3 15.2 1.0 O B:HOH229 2.3 20.4 1.0 CD2 B:HIS40 3.0 10.7 1.0 CE1 B:HIS15 3.1 15.4 1.0 CD2 B:HIS38 3.1 12.6 1.0 CE1 B:HIS40 3.2 13.3 1.0 O B:HOH192 3.2 28.2 1.0 SG B:CYS34 3.3 30.6 1.0 CE1 B:HIS38 3.4 15.8 1.0 CD2 B:HIS15 3.4 15.3 1.0 OE2 B:GLU168 4.0 35.5 1.0 CG B:HIS40 4.2 14.7 1.0 CD B:GLU168 4.2 33.8 1.0 ND1 B:HIS40 4.3 13.0 1.0 ND1 B:HIS15 4.3 16.2 1.0 CG B:HIS38 4.3 12.9 1.0 ND1 B:HIS38 4.4 15.7 1.0 CG B:HIS15 4.5 14.0 1.0 CG2 B:VAL17 4.6 14.6 1.0 O B:HOH212 4.6 23.9 1.0 CG B:GLU168 4.6 29.6 1.0 OE1 B:GLU168 4.7 37.9 1.0 O B:HOH206 4.8 45.1 1.0

Zinc binding site 3 out of 6 in the Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn200 b:25.2 occ:1.00 O C:HOH221 2.1 22.8 1.0 NE2 C:HIS40 2.2 16.1 1.0 NE2 C:HIS15 2.3 15.0 1.0 NE2 C:HIS38 2.3 16.6 1.0 O C:HOH494 2.4 29.8 1.0 CE1 C:HIS15 3.1 18.7 1.0 CE1 C:HIS40 3.2 16.3 1.0 CE1 C:HIS38 3.2 18.1 1.0 CD2 C:HIS40 3.2 15.8 1.0 CD2 C:HIS38 3.2 17.7 1.0 CD2 C:HIS15 3.3 14.5 1.0 SG C:CYS34 3.5 34.0 1.0 ND1 C:HIS15 4.3 18.0 1.0 ND1 C:HIS40 4.3 9.0 1.0 ND1 C:HIS38 4.3 12.4 1.0 CG C:HIS40 4.4 12.8 1.0 CG C:HIS38 4.4 13.3 1.0 CG C:HIS15 4.4 15.0 1.0 O C:HOH239 4.4 38.0 1.0 CD C:GLU168 4.5 36.8 1.0 OE2 C:GLU168 4.6 37.6 1.0 O C:HOH231 4.6 26.4 1.0 CG C:GLU168 4.8 29.9 1.0 OE1 C:GLU168 4.8 43.1 1.0 CG2 C:VAL17 4.8 16.9 1.0

Zinc binding site 4 out of 6 in the Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn200 b:25.0 occ:1.00 O D:HOH203 2.1 19.9 1.0 NE2 D:HIS40 2.2 14.1 1.0 NE2 D:HIS38 2.2 15.3 1.0 NE2 D:HIS15 2.3 13.6 1.0 O D:HOH202 2.5 30.2 1.0 CE1 D:HIS38 3.1 14.1 1.0 CE1 D:HIS15 3.1 15.4 1.0 CE1 D:HIS40 3.2 11.4 1.0 CD2 D:HIS40 3.2 11.6 1.0 CD2 D:HIS38 3.3 17.9 1.0 CD2 D:HIS15 3.4 12.3 1.0 SG D:CYS34 3.4 32.1 1.0 ND1 D:HIS38 4.3 16.4 1.0 O D:HOH296 4.3 31.3 1.0 ND1 D:HIS15 4.3 15.4 1.0 ND1 D:HIS40 4.3 8.5 1.0 CD D:GLU168 4.3 34.8 1.0 CG D:HIS40 4.3 12.7 1.0 OE2 D:GLU168 4.4 35.5 1.0 CG D:HIS38 4.4 14.7 1.0 CG D:HIS15 4.5 16.0 1.0 CG D:GLU168 4.5 29.2 1.0 O D:HOH337 4.5 23.1 1.0 OE1 D:GLU168 4.7 38.3 1.0 CG2 D:VAL17 4.8 15.6 1.0

Zinc binding site 5 out of 6 in the Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn200 b:27.2 occ:1.00 O E:HOH713 2.2 25.3 1.0 NE2 E:HIS40 2.2 15.3 1.0 NE2 E:HIS15 2.3 14.0 1.0 NE2 E:HIS38 2.3 15.4 1.0 O E:HOH346 2.4 26.1 1.0 CD2 E:HIS40 3.1 16.7 1.0 CE1 E:HIS15 3.1 13.0 1.0 CE1 E:HIS38 3.2 15.6 1.0 SG E:CYS34 3.2 35.6 1.0 CE1 E:HIS40 3.3 16.0 1.0 CD2 E:HIS38 3.3 14.7 1.0 CD2 E:HIS15 3.4 15.9 1.0 CG E:HIS40 4.3 16.4 1.0 ND1 E:HIS15 4.3 14.8 1.0 ND1 E:HIS38 4.3 16.1 1.0 ND1 E:HIS40 4.3 16.5 1.0 OE2 E:GLU168 4.3 38.5 1.0 O A:HOH527 4.4 33.5 1.0 CG E:HIS38 4.4 14.1 1.0 CG E:HIS15 4.4 15.0 1.0 O E:HOH234 4.6 30.5 1.0 CD E:GLU168 4.6 36.3 1.0 CG E:GLU168 4.7 29.0 1.0 CG2 E:VAL17 4.8 16.1 1.0 CB E:CYS34 4.9 24.5 1.0

Zinc binding site 6 out of 6 in the Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn200 b:26.2 occ:1.00 NE2 F:HIS40 2.1 10.8 1.0 NE2 F:HIS38 2.3 16.6 1.0 NE2 F:HIS15 2.3 17.2 1.0 O F:HOH712 2.5 28.4 1.0 O F:HOH205 2.5 23.3 1.0 CD2 F:HIS40 3.0 11.4 1.0 CE1 F:HIS15 3.1 14.1 1.0 CE1 F:HIS40 3.2 10.7 1.0 CE1 F:HIS38 3.2 18.6 1.0 CD2 F:HIS38 3.3 16.5 1.0 CD2 F:HIS15 3.4 13.8 1.0 SG F:CYS34 3.5 30.2 1.0 CD F:GLU168 4.1 38.1 1.0 CG F:HIS40 4.2 14.1 1.0 OE2 F:GLU168 4.2 41.4 1.0 ND1 F:HIS40 4.3 11.1 1.0 OE1 F:GLU168 4.3 43.0 1.0 ND1 F:HIS15 4.3 13.8 1.0 ND1 F:HIS38 4.4 17.9 1.0 O F:HOH269 4.4 27.7 1.0 CG F:HIS38 4.4 17.3 1.0 CG F:HIS15 4.5 14.3 1.0 CG F:GLU168 4.6 31.1 1.0 CG2 F:VAL17 4.7 16.7 1.0

U.A.Ramagopal, R.Toro, S.K.Burley, S.C.Almo. Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes To Be Published.