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Zinc in PDB 3ju2: Crystal Structure of Protein SMC04130 From Sinorhizobium Meliloti 1021

Protein crystallography data

The structure of Crystal Structure of Protein SMC04130 From Sinorhizobium Meliloti 1021, PDB code: 3ju2 was solved by Y.Patskovsky, R.Foti, U.Ramagopal, V.Malashkevich, R.Toro, J.Freeman, S.Miller, J.M.Sauder, F.M.Raushel, S.K.Burley, S.C.Almo, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.102, 92.102, 157.345, 90.00, 90.00, 120.00
R / Rfree (%) 19.9 / 24.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Protein SMC04130 From Sinorhizobium Meliloti 1021 (pdb code 3ju2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Protein SMC04130 From Sinorhizobium Meliloti 1021, PDB code: 3ju2:

Zinc binding site 1 out of 1 in 3ju2

Go back to Zinc Binding Sites List in 3ju2
Zinc binding site 1 out of 1 in the Crystal Structure of Protein SMC04130 From Sinorhizobium Meliloti 1021


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Protein SMC04130 From Sinorhizobium Meliloti 1021 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn285

b:37.3
occ:0.50
OD2 A:ASP176 2.0 33.7 1.0
OE2 A:GLU141 2.1 47.2 1.0
OE1 A:GLU247 2.1 43.4 1.0
ND1 A:HIS203 2.3 43.1 1.0
O A:HOH333 2.8 43.6 1.0
CG A:ASP176 2.9 31.4 1.0
CD A:GLU141 3.1 48.8 1.0
CE1 A:HIS203 3.2 46.6 1.0
CB A:ASP176 3.2 29.4 1.0
CD A:GLU247 3.2 43.8 1.0
CG A:HIS203 3.3 39.8 1.0
CB A:HIS203 3.6 32.4 1.0
OE1 A:GLU141 3.6 51.5 1.0
OE2 A:GLU247 3.8 41.7 1.0
OD1 A:ASP176 4.0 31.8 1.0
O A:HOH317 4.1 41.4 1.0
NH1 A:ARG218 4.2 32.1 1.0
NE2 A:HIS203 4.3 42.2 1.0
NE2 A:HIS179 4.4 28.8 1.0
CD2 A:HIS179 4.4 31.2 1.0
CD2 A:HIS203 4.4 41.2 1.0
CG A:GLU141 4.4 35.1 1.0
CG A:GLU247 4.4 33.1 1.0
NH2 A:ARG218 4.4 38.7 1.0
CB A:GLU247 4.5 31.8 1.0
CA A:ASP176 4.5 27.8 1.0
CZ A:ARG218 4.8 34.7 1.0

Reference:

Y.Patskovsky, R.Foti, U.Ramagopal, V.Malashkevich, J.Freeman, S.Miller, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of Protein SMC04130 From Sinorhizobium Meliloti To Be Published.
Page generated: Wed Dec 16 04:28:44 2020

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