Zinc in PDB 3ipj: The Crystal Structure of One Domain of the Pts System, Iiabc Component From Clostridium Difficile

The structure of The Crystal Structure of One Domain of the Pts System, Iiabc Component From Clostridium Difficile, PDB code: 3ipj was solved by R.Zhang, L.Bigelow, G.Cobb, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.64 / 1.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	37.635, 34.734, 72.195, 90.00, 90.07, 90.00
R / Rfree (%)	13.3 / 17

The binding sites of Zinc atom in the The Crystal Structure of One Domain of the Pts System, Iiabc Component From Clostridium Difficile (pdb code 3ipj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Crystal Structure of One Domain of the Pts System, Iiabc Component From Clostridium Difficile, PDB code: 3ipj:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the The Crystal Structure of One Domain of the Pts System, Iiabc Component From Clostridium Difficile


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of One Domain of the Pts System, Iiabc Component From Clostridium Difficile within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn96 b:7.4 occ:1.00 O A:HOH149 2.2 9.6 1.0 OE2 B:GLU40 2.3 12.9 1.0 SG A:CYS28 2.5 10.7 1.0 OE1 B:GLU40 2.5 10.8 1.0 O A:HOH156 2.5 11.1 1.0 CD B:GLU40 2.7 10.9 1.0 CB A:CYS28 3.2 13.5 1.0 OG1 A:THR30 3.8 9.8 1.0 N A:ALA29 4.0 10.3 1.0 NH2 A:ARG33 4.2 10.8 1.0 O B:HOH151 4.2 20.2 1.0 CG B:GLU40 4.2 10.7 1.0 N A:THR30 4.3 9.1 1.0 CA A:CYS28 4.6 11.5 1.0 O B:HOH119 4.7 18.4 1.0 C A:CYS28 4.7 9.6 1.0 CB A:ALA29 4.8 9.9 1.0 CA A:ALA29 4.9 8.6 1.0 CG A:ARG31 5.0 8.4 1.0 CB A:THR30 5.0 10.8 1.0

Zinc binding site 2 out of 2 in the The Crystal Structure of One Domain of the Pts System, Iiabc Component From Clostridium Difficile


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of One Domain of the Pts System, Iiabc Component From Clostridium Difficile within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn97 b:7.1 occ:1.00 O B:HOH165 2.4 14.2 1.0 SG B:CYS28 2.5 9.2 1.0 CB B:CYS28 3.4 10.8 1.0 OG1 B:THR30 3.9 10.9 1.0 N B:ALA29 4.0 12.2 1.0 NH2 B:ARG33 4.2 11.2 1.0 N B:THR30 4.3 10.6 1.0 CB B:ALA29 4.5 12.7 1.0 CA B:CYS28 4.7 10.1 1.0 C B:CYS28 4.7 11.4 1.0 CA B:ALA29 4.7 13.9 1.0 CG B:ARG31 5.0 10.0 1.0

R.Zhang, L.Bigelow, G.Cobb, A.Joachimiak. The Crystal Structure of One Domain of the Pts System, Iiabc Component From Clostridium Difficile To Be Published.