Zinc in PDB 3hjt: Structure of Laminin Binding Protein (Lmb) of Streptococcus Agalactiae A Bifunctional Protein with Adhesin and Metal Transporting Activity

The structure of Structure of Laminin Binding Protein (Lmb) of Streptococcus Agalactiae A Bifunctional Protein with Adhesin and Metal Transporting Activity, PDB code: 3hjt was solved by K.Ponnuraj, P.Ragunathan, B.Spellerberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	53.641, 70.411, 74.971, 90.00, 96.14, 90.00
R / Rfree (%)	23.4 / 27.6

The binding sites of Zinc atom in the Structure of Laminin Binding Protein (Lmb) of Streptococcus Agalactiae A Bifunctional Protein with Adhesin and Metal Transporting Activity (pdb code 3hjt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Laminin Binding Protein (Lmb) of Streptococcus Agalactiae A Bifunctional Protein with Adhesin and Metal Transporting Activity, PDB code: 3hjt:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Laminin Binding Protein (Lmb) of Streptococcus Agalactiae A Bifunctional Protein with Adhesin and Metal Transporting Activity


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Laminin Binding Protein (Lmb) of Streptococcus Agalactiae A Bifunctional Protein with Adhesin and Metal Transporting Activity within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1 b:39.8 occ:1.00 NE2 A:HIS66 2.1 47.9 1.0 OE2 A:GLU281 2.2 48.7 1.0 NE2 A:HIS206 2.2 25.8 1.0 NE2 A:HIS142 2.3 40.9 1.0 CD2 A:HIS66 2.9 48.4 1.0 CD A:GLU281 3.0 48.0 1.0 CE1 A:HIS206 3.1 31.3 1.0 OE1 A:GLU281 3.2 50.8 1.0 CD2 A:HIS206 3.2 36.0 1.0 CE1 A:HIS66 3.2 49.6 1.0 CD2 A:HIS142 3.3 39.7 1.0 CE1 A:HIS142 3.3 41.1 1.0 O A:ILE226 3.4 44.2 1.0 CB A:ALA208 4.0 38.9 1.0 CG A:HIS66 4.1 48.6 1.0 ND1 A:HIS66 4.2 51.1 1.0 ND1 A:HIS206 4.3 36.4 1.0 CG A:HIS206 4.3 37.6 1.0 CG A:GLU281 4.4 44.8 1.0 ND1 A:HIS142 4.4 44.2 1.0 CG A:HIS142 4.4 42.6 1.0 C A:ILE226 4.6 44.4 1.0 CD A:PRO228 4.7 44.4 1.0 CA A:ALA208 4.8 39.7 1.0 CG A:PRO228 5.0 45.8 1.0 O A:THR207 5.0 37.2 1.0

Zinc binding site 2 out of 2 in the Structure of Laminin Binding Protein (Lmb) of Streptococcus Agalactiae A Bifunctional Protein with Adhesin and Metal Transporting Activity


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Laminin Binding Protein (Lmb) of Streptococcus Agalactiae A Bifunctional Protein with Adhesin and Metal Transporting Activity within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn2 b:40.5 occ:1.00 NE2 B:HIS66 2.1 41.8 1.0 OE2 B:GLU281 2.2 45.2 1.0 NE2 B:HIS206 2.2 26.4 1.0 NE2 B:HIS142 2.3 51.0 1.0 CD2 B:HIS66 2.9 43.1 1.0 CD B:GLU281 2.9 43.9 1.0 OE1 B:GLU281 3.1 47.2 1.0 CE1 B:HIS206 3.2 29.8 1.0 CE1 B:HIS66 3.2 43.3 1.0 CD2 B:HIS142 3.3 49.3 1.0 CD2 B:HIS206 3.3 32.9 1.0 CE1 B:HIS142 3.3 50.1 1.0 O B:ILE226 3.5 47.9 1.0 CB B:ALA208 4.0 41.9 1.0 CG B:HIS66 4.1 46.5 1.0 ND1 B:HIS66 4.3 46.5 1.0 ND1 B:HIS206 4.3 31.0 1.0 CG B:GLU281 4.3 41.2 1.0 ND1 B:HIS142 4.4 51.3 1.0 CG B:HIS206 4.4 35.3 1.0 CG B:HIS142 4.4 50.4 1.0 C B:ILE226 4.7 46.2 1.0 CD B:PRO228 4.7 45.8 1.0 CA B:ALA208 4.8 39.7 1.0 CG B:PRO228 5.0 47.6 1.0

P.Ragunathan, B.Spellerberg, K.Ponnuraj. Structure of Laminin-Binding Adhesin (Lmb) From Streptococcus Agalactiae Acta Crystallogr.,Sect.D V. 65 1262 2009.
ISSN: ISSN 0907-4449
PubMed: 19966412
DOI: 10.1107/S0907444909038359