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Zinc in PDB 3e9q: Crystal Structure of the Short Chain Dehydrogenase From Shigella Flexneri

Protein crystallography data

The structure of Crystal Structure of the Short Chain Dehydrogenase From Shigella Flexneri, PDB code: 3e9q was solved by Y.Kim, X.Xu, H.Cui, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Centerfor Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.80 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 40.080, 133.200, 48.232, 90.00, 104.03, 90.00
R / Rfree (%) 15.5 / 19.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Short Chain Dehydrogenase From Shigella Flexneri (pdb code 3e9q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Short Chain Dehydrogenase From Shigella Flexneri, PDB code: 3e9q:

Zinc binding site 1 out of 1 in 3e9q

Go back to Zinc Binding Sites List in 3e9q
Zinc binding site 1 out of 1 in the Crystal Structure of the Short Chain Dehydrogenase From Shigella Flexneri


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Short Chain Dehydrogenase From Shigella Flexneri within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn256

b:62.6
occ:1.00
OE2 B:GLU59 2.6 54.4 1.0
CE B:MSE30 2.7 34.8 1.0
CB B:MSE30 3.0 20.6 1.0
CD B:GLU59 3.0 55.5 1.0
NH2 B:ARG34 3.1 35.9 1.0
CA B:MSE30 3.5 18.2 1.0
CG B:MSE30 3.5 24.4 1.0
O B:MSE30 3.5 16.6 1.0
OE1 B:GLU59 3.6 55.9 1.0
C B:MSE30 3.8 18.1 1.0
CG B:GLU59 3.8 45.4 1.0
CB B:GLU59 3.9 36.6 1.0
CG B:ARG34 3.9 29.2 1.0
SE B:MSE30 4.0 33.7 0.7
CG1 B:ILE56 4.2 18.7 1.0
CZ B:ARG34 4.2 39.2 1.0
CD B:ARG34 4.3 32.8 1.0
CA B:ILE56 4.4 19.0 1.0
NE B:ARG34 4.7 35.0 1.0
O B:HIS55 4.7 23.9 0.5
O B:HIS55 4.7 23.9 0.5
CB B:ILE56 4.8 18.6 1.0
N B:ILE56 4.8 23.8 1.0
N B:THR31 4.9 13.9 1.0
N B:MSE30 4.9 15.4 1.0
C B:HIS55 5.0 25.2 0.5
C B:HIS55 5.0 25.2 0.5

Reference:

Y.Kim, X.Xu, H.Cui, A.Savchenko, A.Edwards, A.Joachimiak. Crystal Structure of the Short Chain Dehydrogenase From Shigella Flexneri To Be Published.
Page generated: Wed Dec 16 04:15:15 2020

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