Zinc in PDB 3dfk: The Crystal Structure of Teicoplanin Pseudoaglycone Deacetylase ORF2* Bound to One of Its Products Decanoic Acid

The structure of The Crystal Structure of Teicoplanin Pseudoaglycone Deacetylase ORF2* Bound to One of Its Products Decanoic Acid, PDB code: 3dfk was solved by Y.Zou, J.S.Brunzelle, S.K.Nair, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	41.530, 64.263, 50.375, 90.00, 99.01, 90.00
R / Rfree (%)	17.6 / 22

The binding sites of Zinc atom in the The Crystal Structure of Teicoplanin Pseudoaglycone Deacetylase ORF2* Bound to One of Its Products Decanoic Acid (pdb code 3dfk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of Teicoplanin Pseudoaglycone Deacetylase ORF2* Bound to One of Its Products Decanoic Acid, PDB code: 3dfk:

Zinc binding site 1 out of 1 in the The Crystal Structure of Teicoplanin Pseudoaglycone Deacetylase ORF2* Bound to One of Its Products Decanoic Acid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Teicoplanin Pseudoaglycone Deacetylase ORF2* Bound to One of Its Products Decanoic Acid within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn300 b:24.0 occ:1.00 O A:HOH622 2.0 26.1 1.0 ND1 A:HIS16 2.1 20.0 1.0 OD2 A:ASP19 2.1 21.0 1.0 NE2 A:HIS164 2.1 20.4 1.0 O2 A:DKA400 2.2 31.0 1.0 OD1 A:ASP19 2.6 23.5 1.0 CG A:ASP19 2.7 21.1 1.0 C1 A:DKA400 2.8 34.7 1.0 O1 A:DKA400 2.9 35.4 1.0 CE1 A:HIS16 3.0 19.5 1.0 CE1 A:HIS164 3.0 20.2 1.0 CG A:HIS16 3.1 18.1 1.0 CD2 A:HIS164 3.2 19.1 1.0 CB A:HIS16 3.4 18.4 1.0 C2 A:DKA400 4.1 37.1 1.0 CB A:ASP19 4.1 20.7 1.0 NE2 A:HIS16 4.2 19.2 1.0 ND1 A:HIS164 4.2 19.1 1.0 CD2 A:HIS16 4.2 19.4 1.0 OD1 A:ASP18 4.2 27.0 1.0 OH A:TYR190 4.2 33.1 1.0 C3 A:DKA400 4.3 34.8 1.0 CG A:HIS164 4.3 19.4 1.0 N A:HIS16 4.3 17.5 1.0 CA A:HIS16 4.5 17.8 1.0 CB A:PRO15 4.6 19.0 1.0 CE2 A:TYR190 4.6 34.6 1.0 CG A:PRO15 4.7 19.7 1.0 CZ A:TYR190 4.9 34.0 1.0 O A:HOH411 5.0 24.0 1.0

Y.Zou, J.S.Brunzelle, S.K.Nair. Crystal Structures of Lipoglycopeptide Antibiotic Deacetylases: Implications For the Biosynthesis of A40926 and Teicoplanin. Chem.Biol. V. 15 533 2008.
ISSN: ISSN 1074-5521
PubMed: 18559264
DOI: 10.1016/J.CHEMBIOL.2008.05.009