Atomistry » Zinc » PDB 3d7h-3dgd » 3d9u
Atomistry »
  Zinc »
    PDB 3d7h-3dgd »
      3d9u »

Zinc in PDB 3d9u: The BIR3 Domain of CIAP1 in Complex with the N Terminal Peptide From Smac/Diablo (Avpiaq).

Protein crystallography data

The structure of The BIR3 Domain of CIAP1 in Complex with the N Terminal Peptide From Smac/Diablo (Avpiaq)., PDB code: 3d9u was solved by R.Kulathila, A.Price, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.43 / 2.30
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 62.983, 62.983, 115.343, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Zinc Binding Sites:

The binding sites of Zinc atom in the The BIR3 Domain of CIAP1 in Complex with the N Terminal Peptide From Smac/Diablo (Avpiaq). (pdb code 3d9u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The BIR3 Domain of CIAP1 in Complex with the N Terminal Peptide From Smac/Diablo (Avpiaq)., PDB code: 3d9u:

Zinc binding site 1 out of 1 in 3d9u

Go back to Zinc Binding Sites List in 3d9u
Zinc binding site 1 out of 1 in the The BIR3 Domain of CIAP1 in Complex with the N Terminal Peptide From Smac/Diablo (Avpiaq).


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The BIR3 Domain of CIAP1 in Complex with the N Terminal Peptide From Smac/Diablo (Avpiaq). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:27.5
occ:1.00
NE2 A:HIS320 2.1 23.5 1.0
SG A:CYS327 2.3 31.4 1.0
SG A:CYS300 2.4 24.3 1.0
SG A:CYS303 2.4 25.3 1.0
CE1 A:HIS320 2.8 25.2 1.0
CB A:CYS327 3.0 31.4 1.0
CB A:CYS300 3.1 22.7 1.0
CB A:CYS303 3.3 25.6 1.0
CD2 A:HIS320 3.3 26.1 1.0
N A:CYS303 3.7 26.3 1.0
ND1 A:HIS320 4.0 26.1 1.0
CA A:CYS303 4.1 26.9 1.0
CG A:HIS320 4.3 23.9 1.0
CA A:CYS327 4.4 30.1 1.0
CB A:CYS302 4.6 27.3 1.0
CA A:CYS300 4.6 24.5 1.0
C A:CYS302 4.8 27.4 1.0
C A:CYS303 4.8 27.6 1.0
N A:ASP304 4.9 29.5 1.0
CB A:PHE324 4.9 23.9 1.0

Reference:

R.Kulathila, B.Vash, D.Sage, S.Cornell-Kennon, K.Wright, J.Koehn, T.Stams, K.Clark, A.Price. The Structure of the BIR3 Domain of CIAP1 in Complex with the N-Terminal Peptides of Smac and Caspase-9. Acta Crystallogr.,Sect.D V. 65 58 2009.
ISSN: ISSN 0907-4449
PubMed: 19153467
DOI: 10.1107/S0907444908039243
Page generated: Wed Dec 16 04:12:27 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy