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Zinc in PDB 3b6n: Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase PV003920 From Plasmodium Vivax

Enzymatic activity of Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase PV003920 From Plasmodium Vivax

All present enzymatic activity of Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase PV003920 From Plasmodium Vivax:
4.6.1.12;

Protein crystallography data

The structure of Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase PV003920 From Plasmodium Vivax, PDB code: 3b6n was solved by A.K.Wernimont, J.Lew, I.Kozieradzki, Y.H.Lin, X.Sun, C.Khuu, Y.Zhao, M.Schapira, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, A.Bochkarev, R.Hui, J.D.Artz, T.Xiao, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.84 / 2.26
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 79.661, 79.661, 79.661, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 25.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase PV003920 From Plasmodium Vivax (pdb code 3b6n). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase PV003920 From Plasmodium Vivax, PDB code: 3b6n:

Zinc binding site 1 out of 1 in 3b6n

Go back to Zinc Binding Sites List in 3b6n
Zinc binding site 1 out of 1 in the Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase PV003920 From Plasmodium Vivax


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase PV003920 From Plasmodium Vivax within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1157

b:0.7
occ:1.00
 OD2 A:ASP12 2.3 39.2 1.0
NE2 A:HIS14 2.8 43.6 1.0
CG A:ASP12 3.2 38.4 1.0
CG A:HIS70 3.3 43.4 1.0
OD1 A:ASP12 3.3 39.8 1.0
ND1 A:HIS70 3.3 45.8 1.0
NE2 A:HIS62 3.4 68.9 1.0
CD2 A:HIS70 3.4 46.9 1.0
CE1 A:HIS14 3.5 38.8 1.0
CE1 A:HIS70 3.5 46.5 1.0
NE2 A:HIS70 3.6 46.3 1.0
CD2 A:HIS14 3.7 45.1 1.0
CB A:HIS70 3.9 39.1 1.0
CE1 A:HIS62 4.2 69.8 1.0
CD2 A:HIS62 4.4 65.2 1.0
OG A:SER63 4.5 53.9 1.0
ND1 A:HIS14 4.6 45.8 1.0
CB A:ASP12 4.6 37.0 1.0
CG A:HIS14 4.8 43.6 1.0
O A:ASP66 4.8 36.2 1.0
CA A:GLY65 4.9 40.8 1.0

Reference:

A.K.Wernimont, J.Lew, I.Kozieradzki, Y.H.Lin, X.Sun, C.Khuu, Y.Zhao, M.Schapira, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, A.Bochkarev, R.Hui, J.D.Artz, T.Xiao. Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase PV003920 From Plasmodium Vivax. To Be Published.
Page generated: Thu Oct 24 11:26:20 2024

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