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Zinc in PDB 3b1b: The Unique Structure of Wild Type Carbonic Anhydrase Alpha-CA1 From Chlamydomonas Reinhardtii

Enzymatic activity of The Unique Structure of Wild Type Carbonic Anhydrase Alpha-CA1 From Chlamydomonas Reinhardtii

All present enzymatic activity of The Unique Structure of Wild Type Carbonic Anhydrase Alpha-CA1 From Chlamydomonas Reinhardtii:
4.2.1.1;

Protein crystallography data

The structure of The Unique Structure of Wild Type Carbonic Anhydrase Alpha-CA1 From Chlamydomonas Reinhardtii, PDB code: 3b1b was solved by S.Shimizu, A.Takenaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.30 / 1.88
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 134.300, 134.300, 120.100, 90.00, 90.00, 120.00
R / Rfree (%) 18.7 / 21.8

Zinc Binding Sites:

The binding sites of Zinc atom in the The Unique Structure of Wild Type Carbonic Anhydrase Alpha-CA1 From Chlamydomonas Reinhardtii (pdb code 3b1b). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Unique Structure of Wild Type Carbonic Anhydrase Alpha-CA1 From Chlamydomonas Reinhardtii, PDB code: 3b1b:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3b1b

Go back to Zinc Binding Sites List in 3b1b
Zinc binding site 1 out of 2 in the The Unique Structure of Wild Type Carbonic Anhydrase Alpha-CA1 From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Unique Structure of Wild Type Carbonic Anhydrase Alpha-CA1 From Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn378

b:20.4
occ:1.00
ND1 A:HIS182 2.0 19.9 1.0
NE2 A:HIS163 2.1 20.3 1.0
NE2 A:HIS165 2.1 14.6 1.0
O A:HOH714 2.6 26.8 1.0
CE1 A:HIS182 2.9 16.9 1.0
CD2 A:HIS163 3.0 18.8 1.0
CD2 A:HIS165 3.1 14.5 1.0
CE1 A:HIS163 3.1 21.8 1.0
CE1 A:HIS165 3.1 17.1 1.0
CG A:HIS182 3.1 16.0 1.0
CB A:HIS182 3.6 16.9 1.0
OG1 A:THR260 3.8 20.1 1.0
O A:HOH785 3.9 31.2 1.0
O A:HOH578 4.0 33.3 1.0
OE1 A:GLU169 4.0 18.6 1.0
NE2 A:HIS182 4.0 17.0 1.0
CG A:HIS163 4.2 19.2 1.0
ND1 A:HIS163 4.2 20.4 1.0
CD2 A:HIS182 4.2 18.5 1.0
ND1 A:HIS165 4.2 13.7 1.0
CG A:HIS165 4.2 14.9 1.0
CD A:GLU169 4.9 18.8 1.0

Zinc binding site 2 out of 2 in 3b1b

Go back to Zinc Binding Sites List in 3b1b
Zinc binding site 2 out of 2 in the The Unique Structure of Wild Type Carbonic Anhydrase Alpha-CA1 From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Unique Structure of Wild Type Carbonic Anhydrase Alpha-CA1 From Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn378

b:16.9
occ:1.00
O B:HOH794 1.8 23.5 1.0
ND1 B:HIS182 2.0 14.5 1.0
NE2 B:HIS163 2.1 20.4 1.0
NE2 B:HIS165 2.1 11.5 1.0
CE1 B:HIS182 2.9 16.7 1.0
CD2 B:HIS163 2.9 18.2 1.0
CE1 B:HIS165 3.0 14.2 1.0
CG B:HIS182 3.1 16.7 1.0
CD2 B:HIS165 3.1 12.8 1.0
CE1 B:HIS163 3.1 19.3 1.0
CB B:HIS182 3.5 16.8 1.0
OG1 B:THR260 3.8 18.2 1.0
O B:HOH617 3.8 26.5 1.0
O B:HOH623 4.0 26.6 1.0
OE1 B:GLU169 4.0 17.3 1.0
NE2 B:HIS182 4.1 17.1 1.0
ND1 B:HIS165 4.1 12.9 1.0
CG B:HIS163 4.1 17.6 1.0
CD2 B:HIS182 4.2 16.6 1.0
ND1 B:HIS163 4.2 17.6 1.0
CG B:HIS165 4.2 11.9 1.0
CD B:GLU169 4.9 17.6 1.0

Reference:

K.Suzuki, S.Y.Yang, S.Shimizu, E.C.Morishita, J.Jiang, F.Zhang, M.M.Hoque, Y.Sato, M.Tsunoda, T.Sekiguchi, A.Takenaka. The Unique Structure of Carbonic Anhydrase Alpha CA1 From Chlamydomonas Reinhardtii Acta Crystallogr.,Sect.D V. 67 894 2011.
ISSN: ISSN 0907-4449
PubMed: 21931221
DOI: 10.1107/S0907444911032884
Page generated: Wed Dec 16 04:08:10 2020

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