Zinc in PDB 3ad9: Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 Sarcosine-Reduced Form

All present enzymatic activity of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 Sarcosine-Reduced Form:
1.5.3.1;

The structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 Sarcosine-Reduced Form, PDB code: 3ad9 was solved by H.Suzuki, T.Moriguchi, K.Ida, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.25 / 2.30
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	198.563, 198.563, 196.639, 90.00, 90.00, 120.00
R / Rfree (%)	16.9 / 21.1

The binding sites of Zinc atom in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 Sarcosine-Reduced Form (pdb code 3ad9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 Sarcosine-Reduced Form, PDB code: 3ad9:

Zinc binding site 1 out of 1 in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 Sarcosine-Reduced Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 Sarcosine-Reduced Form within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn100 b:21.7 occ:1.00 ND1 D:HIS59 2.2 21.8 1.0 SG D:CYS63 2.3 21.6 1.0 SG D:CYS9 2.3 22.1 1.0 SG D:CYS6 2.4 21.4 1.0 CG D:HIS59 3.2 21.4 1.0 CE1 D:HIS59 3.2 21.2 1.0 CB D:CYS9 3.3 21.1 1.0 CB D:CYS63 3.3 21.1 1.0 CB D:HIS59 3.4 19.9 1.0 CB D:CYS6 3.5 19.5 1.0 N D:CYS63 3.6 22.2 1.0 N D:CYS9 3.7 20.9 1.0 CB D:ASN8 4.0 20.3 1.0 CA D:CYS63 4.1 21.8 1.0 CA D:CYS9 4.1 20.8 1.0 NE2 D:HIS59 4.3 18.6 1.0 CD2 D:HIS59 4.3 18.9 1.0 C D:ASN8 4.6 21.5 1.0 ND2 D:ASN8 4.6 21.2 1.0 CA D:ASN8 4.7 21.6 1.0 C D:GLY62 4.7 21.8 1.0 O C:HOH214 4.8 13.4 1.0 N D:ASN8 4.8 20.6 1.0 CA D:CYS6 4.8 20.0 1.0 CG D:ASN8 4.9 23.6 1.0 CA D:GLY62 4.9 21.7 1.0 C D:CYS63 4.9 21.6 1.0 CA D:HIS59 5.0 20.0 1.0 N D:ARG64 5.0 21.5 1.0

T.Moriguchi, K.Ida, T.Hikima, G.Ueno, M.Yamamoto, H.Suzuki. Channeling and Conformational Changes in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96. J.Biochem. V. 148 491 2010.
ISSN: ISSN 0021-924X
PubMed: 20675294
DOI: 10.1093/JB/MVQ083