Zinc in PDB 2yjp: Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae

The structure of Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae, PDB code: 2yjp was solved by H.Bulut, S.Moniot, F.Scheffel, S.Gathmann, A.Licht, W.Saenger, E.Schneider, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.18 / 2.26
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	58.710, 91.590, 158.300, 90.00, 90.00, 90.00
R / Rfree (%)	18.472 / 23.274

The binding sites of Zinc atom in the Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae (pdb code 2yjp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae, PDB code: 2yjp:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in the Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1270 b:22.5 occ:1.00 O A:HOH2078 1.8 25.4 1.0 OE2 A:GLU178 2.1 28.9 1.0 ND1 A:HIS176 2.1 27.5 1.0 CD A:GLU178 2.9 27.1 1.0 CE1 A:HIS176 2.9 22.8 1.0 OE1 A:GLU178 3.0 18.3 1.0 CG A:HIS176 3.1 21.8 1.0 CB A:HIS176 3.6 20.0 1.0 CA A:HIS176 3.8 23.3 1.0 O A:SER175 4.0 26.1 1.0 NE2 A:HIS176 4.1 22.5 1.0 CD2 A:HIS176 4.2 24.5 1.0 CG A:GLU178 4.3 29.0 1.0 CB A:MET152 4.5 24.2 1.0 CG A:MET152 4.6 25.9 1.0 O A:HOH2028 4.7 30.3 1.0 N A:HIS176 4.7 23.0 1.0 C A:SER175 4.7 25.0 1.0 C A:HIS176 4.8 24.2 1.0

Zinc binding site 2 out of 8 in the Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1271 b:25.4 occ:1.00 O A:HOH2097 2.2 19.8 1.0 OE1 A:GLU215 2.2 24.2 1.0 OE2 A:GLU215 2.4 31.0 1.0 CD A:GLU215 2.7 22.7 1.0 CG A:GLU215 4.2 19.4 1.0

Zinc binding site 3 out of 8 in the Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1272 b:29.7 occ:1.00 OD2 A:ASP185 2.0 21.4 1.0 OE2 B:GLU189 2.0 26.9 1.0 OE2 A:GLU98 2.1 39.6 1.0 OD1 B:ASP185 2.3 41.1 1.0 OE1 A:GLU98 2.5 34.5 1.0 CD A:GLU98 2.6 33.2 1.0 CD B:GLU189 2.7 24.2 1.0 CG A:ASP185 2.8 22.7 1.0 OE1 B:GLU189 2.8 24.1 1.0 CB A:ASP185 3.1 19.0 1.0 CG B:ASP185 3.3 35.6 1.0 OD2 B:ASP185 3.6 41.0 1.0 OD1 A:ASP185 3.9 24.8 1.0 O A:HOH2085 3.9 21.9 1.0 CG B:GLN186 4.0 28.7 1.0 CG A:GLU98 4.1 29.2 1.0 CG B:GLU189 4.2 21.9 1.0 CA A:ASP185 4.6 19.2 1.0 CB B:ASP185 4.7 28.6 1.0 CB B:GLN186 4.8 23.8 1.0 N B:GLN186 4.9 22.9 1.0

Zinc binding site 4 out of 8 in the Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1273 b:85.9 occ:1.00 OD2 A:ASP196 2.5 40.7 1.0 OD1 A:ASP196 3.0 36.6 1.0 O A:HOH2090 3.0 41.8 1.0 CG A:ASP196 3.2 34.6 1.0 CB A:ASP192 4.4 23.2 1.0 O A:HOH2091 4.5 35.4 1.0 O A:ASP192 4.7 20.9 1.0 CB A:ASP196 4.7 28.3 1.0 CG A:ASP192 4.7 31.1 1.0 OD2 A:ASP192 5.0 38.4 1.0

Zinc binding site 5 out of 8 in the Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1274 b:85.6 occ:1.00 OE1 A:GLU46 2.5 57.0 1.0 CD A:GLU46 3.0 54.8 1.0 OE2 A:GLU46 3.1 59.4 1.0 O A:HOH2003 3.3 49.1 1.0 CG A:GLU46 4.2 47.7 1.0

Zinc binding site 6 out of 8 in the Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1275 b:61.4 occ:1.00 OE2 A:GLU189 1.9 36.8 1.0 O A:HOH2084 2.4 16.2 1.0 O A:HOH2086 2.5 38.0 1.0 CD A:GLU189 2.9 36.3 1.0 OD2 B:ASP185 3.0 41.0 1.0 OE1 A:GLU189 3.1 32.2 1.0 O A:HOH2085 3.4 21.9 1.0 CG B:ASP185 3.5 35.6 1.0 CB B:ASP185 3.6 28.6 1.0 N B:ASP185 4.2 23.8 1.0 CG A:GLU189 4.3 29.3 1.0 CA B:ASP185 4.5 25.6 1.0 OD1 B:ASP185 4.6 41.1 1.0 CB A:ASP185 4.9 19.0 1.0 N A:ASP185 4.9 19.6 1.0

Zinc binding site 7 out of 8 in the Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1270 b:26.4 occ:1.00 O B:HOH2094 1.9 19.6 1.0 OE2 C:GLU178 2.0 24.8 1.0 ND1 C:HIS176 2.2 28.3 1.0 OE2 B:GLU215 2.3 32.6 1.0 OE1 B:GLU215 2.5 29.6 1.0 CD B:GLU215 2.7 27.0 1.0 CD C:GLU178 2.9 27.3 1.0 CE1 C:HIS176 3.0 26.1 1.0 OE1 C:GLU178 3.1 24.9 1.0 CG C:HIS176 3.3 25.6 1.0 CB C:HIS176 3.7 23.7 1.0 O B:HOH2093 3.9 40.0 1.0 CA C:HIS176 3.9 25.4 1.0 O C:SER175 4.0 27.8 1.0 NE2 C:HIS176 4.2 24.5 1.0 CG B:GLU215 4.2 20.2 1.0 CG C:GLU178 4.3 28.8 1.0 CD2 C:HIS176 4.3 22.1 1.0 CB C:MET152 4.5 28.2 1.0 CG C:MET152 4.6 29.0 1.0 C C:SER175 4.8 26.7 1.0 N C:HIS176 4.8 25.7 1.0 CE B:LYS214 4.8 26.1 1.0 C C:HIS176 4.9 25.3 1.0

Zinc binding site 8 out of 8 in the Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of the Solute Receptors For L-Cysteine of Neisseria Gonorrhoeae within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1271 b:35.6 occ:1.00 O C:HOH2084 1.8 34.0 1.0 OD2 C:ASP196 2.2 30.6 1.0 OD2 C:ASP192 2.4 31.6 1.0 OD1 C:ASP196 2.9 27.3 1.0 CG C:ASP196 2.9 30.4 1.0 CG C:ASP192 3.0 28.9 1.0 OD1 C:ASP192 3.1 33.2 1.0 O C:HOH2085 4.1 35.9 1.0 O C:ASP192 4.3 24.7 1.0 CB C:ASP196 4.4 29.3 1.0 CB C:ASP192 4.4 23.1 1.0 C C:ASP192 4.8 23.0 1.0

H.Bulut, S.Moniot, A.Licht, F.Scheffel, S.Gathmann, W.Saenger, E.Schneider. Crystal Structures of Two Solute Receptors For L-Cystine and L-Cysteine, Respectively, of the Human Pathogen Neisseria Gonorrhoeae. J.Mol.Biol. V. 415 560 2012.
ISSN: ISSN 0022-2836
PubMed: 22138345
DOI: 10.1016/J.JMB.2011.11.030