Atomistry » Zinc » PDB 2y7e-2yql » 2yb5
Atomistry »
  Zinc »
    PDB 2y7e-2yql »
      2yb5 »

Zinc in PDB 2yb5: Structure of the Fusidic Acid Resistance Protein Fusc

Protein crystallography data

The structure of Structure of the Fusidic Acid Resistance Protein Fusc, PDB code: 2yb5 was solved by G.Cox, T.A.Edwards, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 34.150, 109.610, 61.150, 90.00, 101.72, 90.00
R / Rfree (%) 21.334 / 28.773

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Fusidic Acid Resistance Protein Fusc (pdb code 2yb5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Fusidic Acid Resistance Protein Fusc, PDB code: 2yb5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2yb5

Go back to Zinc Binding Sites List in 2yb5
Zinc binding site 1 out of 2 in the Structure of the Fusidic Acid Resistance Protein Fusc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Fusidic Acid Resistance Protein Fusc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1213

b:30.9
occ:1.00
SG A:CYS188 2.1 34.1 1.0
SG A:CYS155 2.3 36.3 1.0
SG A:CYS158 2.4 40.3 1.0
SG A:CYS194 2.4 31.2 1.0
CB A:CYS155 3.0 40.1 1.0
CB A:CYS194 3.2 34.2 1.0
CB A:CYS188 3.3 35.0 1.0
CB A:CYS158 3.3 41.5 1.0
CA A:CYS194 3.6 35.4 1.0
N A:CYS158 3.7 40.1 1.0
N A:CYS188 4.0 34.8 1.0
CA A:CYS158 4.2 41.2 1.0
CA A:CYS188 4.2 35.0 1.0
CA A:CYS155 4.5 40.6 1.0
C A:CYS194 4.5 35.5 1.0
CB A:ILE157 4.5 37.2 1.0
O A:CYS194 4.6 35.1 1.0
N A:CYS194 4.6 36.5 1.0
ND2 A:ASN197 4.7 43.0 1.0
C A:ILE157 4.8 39.4 1.0
OG A:SER162 4.9 49.0 1.0
N A:ILE157 4.9 38.4 1.0
C A:CYS155 5.0 40.0 1.0
CG2 A:ILE157 5.0 36.6 1.0
C A:CYS158 5.0 43.0 1.0

Zinc binding site 2 out of 2 in 2yb5

Go back to Zinc Binding Sites List in 2yb5
Zinc binding site 2 out of 2 in the Structure of the Fusidic Acid Resistance Protein Fusc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Fusidic Acid Resistance Protein Fusc within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn1220

b:27.9
occ:1.00
SG F:CYS158 2.3 34.4 1.0
SG F:CYS194 2.3 28.4 1.0
SG F:CYS188 2.3 36.2 1.0
SG F:CYS155 2.4 34.0 1.0
CB F:CYS194 3.1 29.4 1.0
CB F:CYS155 3.1 38.4 1.0
CB F:CYS158 3.3 35.6 1.0
CB F:CYS188 3.3 35.7 1.0
CA F:CYS194 3.5 30.7 1.0
N F:CYS158 3.7 34.6 1.0
N F:CYS188 4.0 35.3 1.0
CA F:CYS158 4.1 35.7 1.0
CA F:CYS188 4.3 36.3 1.0
C F:CYS194 4.5 29.8 1.0
N F:CYS194 4.6 32.0 1.0
CA F:CYS155 4.6 39.0 1.0
CB F:ILE157 4.6 31.5 1.0
O F:CYS194 4.6 28.3 1.0
C F:ILE157 4.7 33.6 1.0
OG F:SER162 4.8 47.9 1.0
C F:CYS158 4.9 38.1 1.0
OH F:TYR117 4.9 27.2 1.0
C F:CYS155 5.0 37.9 1.0
N F:ILE157 5.0 33.9 1.0

Reference:

G.Cox, G.S.Thompson, H.T.Jenkins, S.W.Homans, T.A.Edwards, A.J.Oneill. Ribosome Clearance By Fusb-Type Proteins Mediates Resistance to the Antibiotic Fusidic Acid Proc.Natl.Acad.Sci.Usa V. 109 2102 2012.
ISSN: ISSN 0027-8424
PubMed: 22308410
DOI: 10.1073/PNAS.1117275109
Page generated: Thu Oct 17 05:47:36 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy