Zinc in PDB 2rv6: Solution Structures of the Dna-Binding Domains (ZF2-ZF3-ZF4) of Immune-Related Zinc-Finger Protein Zfat

The binding sites of Zinc atom in the Solution Structures of the Dna-Binding Domains (ZF2-ZF3-ZF4) of Immune-Related Zinc-Finger Protein Zfat (pdb code 2rv6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Solution Structures of the Dna-Binding Domains (ZF2-ZF3-ZF4) of Immune-Related Zinc-Finger Protein Zfat, PDB code: 2rv6:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Solution Structures of the Dna-Binding Domains (ZF2-ZF3-ZF4) of Immune-Related Zinc-Finger Protein Zfat


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structures of the Dna-Binding Domains (ZF2-ZF3-ZF4) of Immune-Related Zinc-Finger Protein Zfat within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:0.0 occ:1.00 NE2 A:HIS32 1.9 0.0 1.0 NE2 A:HIS28 1.9 0.0 1.0 SG A:CYS15 2.2 0.0 1.0 SG A:CYS12 2.2 0.0 1.0 CD2 A:HIS32 2.9 0.0 1.0 CE1 A:HIS28 2.9 0.0 1.0 CD2 A:HIS28 3.0 0.0 1.0 CE1 A:HIS32 3.0 0.0 1.0 HD2 A:HIS32 3.1 0.0 1.0 HE1 A:HIS28 3.2 0.0 1.0 CB A:CYS12 3.2 0.0 1.0 H A:CYS15 3.3 0.0 1.0 HD2 A:HIS28 3.3 0.0 1.0 HE1 A:HIS32 3.3 0.0 1.0 HB2 A:CYS12 3.4 0.0 1.0 HB2 A:TYR14 3.4 0.0 1.0 HB3 A:CYS12 3.4 0.0 1.0 CB A:CYS15 3.5 0.0 1.0 HB3 A:CYS15 3.6 0.0 1.0 N A:CYS15 3.8 0.0 1.0 HB2 A:LYS17 3.9 0.0 1.0 HD2 A:LYS17 4.0 0.0 1.0 CG A:HIS32 4.0 0.0 1.0 ND1 A:HIS28 4.1 0.0 1.0 ND1 A:HIS32 4.1 0.0 1.0 HD12 A:ILE31 4.1 0.0 1.0 CG A:HIS28 4.1 0.0 1.0 H A:TYR14 4.1 0.0 1.0 CA A:CYS15 4.2 0.0 1.0 H A:LYS17 4.3 0.0 1.0 HB2 A:CYS15 4.4 0.0 1.0 CB A:TYR14 4.4 0.0 1.0 HD21 A:LEU29 4.5 0.0 1.0 HD2 A:TYR14 4.5 0.0 1.0 HE2 A:PHE19 4.6 0.0 1.0 C A:TYR14 4.6 0.0 1.0 HG12 A:ILE31 4.6 0.0 1.0 CA A:CYS12 4.6 0.0 1.0 HG3 A:LYS17 4.7 0.0 1.0 HB3 A:TYR14 4.8 0.0 1.0 HE2 A:LYS17 4.8 0.0 1.0 C A:CYS15 4.8 0.0 1.0 H A:ASN16 4.8 0.0 1.0 N A:TYR14 4.8 0.0 1.0 CA A:TYR14 4.9 0.0 1.0 HA A:LEU29 4.9 0.0 1.0 HA A:CYS12 4.9 0.0 1.0 CB A:LYS17 4.9 0.0 1.0 HZ A:PHE19 4.9 0.0 1.0 CD A:LYS17 4.9 0.0 1.0 HD1 A:HIS28 5.0 0.0 1.0 HD1 A:HIS32 5.0 0.0 1.0 CD1 A:ILE31 5.0 0.0 1.0

Zinc binding site 2 out of 3 in the Solution Structures of the Dna-Binding Domains (ZF2-ZF3-ZF4) of Immune-Related Zinc-Finger Protein Zfat


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structures of the Dna-Binding Domains (ZF2-ZF3-ZF4) of Immune-Related Zinc-Finger Protein Zfat within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn102 b:0.0 occ:1.00 NE2 A:HIS60 1.9 0.0 1.0 NE2 A:HIS56 1.9 0.0 1.0 SG A:CYS43 2.2 0.0 1.0 SG A:CYS40 2.2 0.0 1.0 CE1 A:HIS60 2.9 0.0 1.0 CE1 A:HIS56 2.9 0.0 1.0 CD2 A:HIS56 3.0 0.0 1.0 CD2 A:HIS60 3.0 0.0 1.0 HE1 A:HIS60 3.2 0.0 1.0 HB3 A:TYR45 3.2 0.0 1.0 HE1 A:HIS56 3.2 0.0 1.0 H A:CYS43 3.2 0.0 1.0 CB A:CYS40 3.3 0.0 1.0 HB2 A:GLN42 3.3 0.0 1.0 HD2 A:HIS56 3.3 0.0 1.0 HD2 A:HIS60 3.3 0.0 1.0 HB2 A:CYS40 3.3 0.0 1.0 HB3 A:CYS40 3.5 0.0 1.0 CB A:CYS43 3.5 0.0 1.0 HB3 A:CYS43 3.6 0.0 1.0 N A:CYS43 3.7 0.0 1.0 HB2 A:TYR45 3.9 0.0 1.0 CB A:TYR45 4.0 0.0 1.0 ND1 A:HIS60 4.1 0.0 1.0 ND1 A:HIS56 4.1 0.0 1.0 CG A:HIS56 4.1 0.0 1.0 CG A:HIS60 4.1 0.0 1.0 H A:GLN42 4.1 0.0 1.0 CA A:CYS43 4.1 0.0 1.0 H A:TYR45 4.2 0.0 1.0 CB A:GLN42 4.3 0.0 1.0 HB2 A:CYS43 4.4 0.0 1.0 HD23 A:LEU57 4.4 0.0 1.0 C A:GLN42 4.5 0.0 1.0 CA A:CYS40 4.7 0.0 1.0 C A:CYS43 4.7 0.0 1.0 CG A:TYR45 4.7 0.0 1.0 HD1 A:TYR45 4.7 0.0 1.0 HA A:LEU57 4.8 0.0 1.0 CA A:GLN42 4.8 0.0 1.0 HB3 A:GLN42 4.8 0.0 1.0 N A:GLN42 4.8 0.0 1.0 HA A:CYS40 4.9 0.0 1.0 O A:CYS43 4.9 0.0 1.0 HD2 A:PRO41 4.9 0.0 1.0 HD1 A:HIS60 5.0 0.0 1.0 HD1 A:HIS56 5.0 0.0 1.0 CD1 A:TYR45 5.0 0.0 1.0

Zinc binding site 3 out of 3 in the Solution Structures of the Dna-Binding Domains (ZF2-ZF3-ZF4) of Immune-Related Zinc-Finger Protein Zfat


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structures of the Dna-Binding Domains (ZF2-ZF3-ZF4) of Immune-Related Zinc-Finger Protein Zfat within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn103 b:0.0 occ:1.00 NE2 A:HIS88 1.9 0.0 1.0 NE2 A:HIS83 1.9 0.0 1.0 SG A:CYS70 2.2 0.0 1.0 SG A:CYS67 2.2 0.0 1.0 CD2 A:HIS88 2.9 0.0 1.0 CE1 A:HIS83 3.0 0.0 1.0 CD2 A:HIS83 3.0 0.0 1.0 CE1 A:HIS88 3.0 0.0 1.0 HD2 A:HIS88 3.1 0.0 1.0 HE1 A:HIS83 3.2 0.0 1.0 HB3 A:PHE72 3.2 0.0 1.0 HD2 A:HIS83 3.2 0.0 1.0 CB A:CYS67 3.2 0.0 1.0 HB2 A:CYS67 3.3 0.0 1.0 HE1 A:HIS88 3.3 0.0 1.0 H A:CYS70 3.4 0.0 1.0 HB2 A:TYR69 3.4 0.0 1.0 HB3 A:CYS67 3.5 0.0 1.0 CB A:CYS70 3.5 0.0 1.0 HB3 A:CYS70 3.6 0.0 1.0 N A:CYS70 3.7 0.0 1.0 HB2 A:PHE72 4.0 0.0 1.0 CG A:HIS88 4.0 0.0 1.0 H A:TYR69 4.1 0.0 1.0 ND1 A:HIS88 4.1 0.0 1.0 ND1 A:HIS83 4.1 0.0 1.0 CB A:PHE72 4.1 0.0 1.0 CA A:CYS70 4.1 0.0 1.0 H A:PHE72 4.1 0.0 1.0 CG A:HIS83 4.1 0.0 1.0 HB A:VAL87 4.3 0.0 1.0 HG11 A:VAL87 4.3 0.0 1.0 HB2 A:CYS70 4.4 0.0 1.0 C A:TYR69 4.4 0.0 1.0 CB A:TYR69 4.4 0.0 1.0 HD2 A:TYR69 4.5 0.0 1.0 HG12 A:ILE84 4.5 0.0 1.0 HD2 A:PHE72 4.6 0.0 1.0 C A:CYS70 4.6 0.0 1.0 HG12 A:VAL87 4.6 0.0 1.0 CA A:CYS67 4.6 0.0 1.0 HA A:ILE84 4.8 0.0 1.0 CA A:TYR69 4.8 0.0 1.0 N A:TYR69 4.8 0.0 1.0 HA A:CYS67 4.8 0.0 1.0 HB3 A:TYR69 4.9 0.0 1.0 CG A:PHE72 4.9 0.0 1.0 CG1 A:VAL87 4.9 0.0 1.0 O A:CYS70 4.9 0.0 1.0 HG13 A:ILE84 4.9 0.0 1.0 N A:PHE72 5.0 0.0 1.0

N.Tochio, T.Umehara, K.Nakabayashi, M.Yoneyama, K.Tsuda, M.Shirouzu, S.Koshiba, S.Watanabe, T.Kigawa, T.Sasazuki, S.Shirasawa, S.Yokoyama. Solution Structures of the Dna-Binding Domains of Immune-Related Zinc-Finger Protein Zfat J.Struct.Funct.Genom. 2015.
ISSN: ISSN 1345-711X
PubMed: 25801860
DOI: 10.1007/S10969-015-9196-3