Zinc in PDB 2plm: Crystal Structure of the Protein TM0936 From Thermotoga Maritima Complexed with Zn and S-Inosylhomocysteine

The structure of Crystal Structure of the Protein TM0936 From Thermotoga Maritima Complexed with Zn and S-Inosylhomocysteine, PDB code: 2plm was solved by A.A.Fedorov, E.V.Fedorov, J.C.Hermann, R.Marti-Arbona, B.K.Shoichet, F.M.Raushel, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.53 / 2.10
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	113.278, 113.278, 80.298, 90.00, 90.00, 120.00
R / Rfree (%)	20.9 / 23.8

The binding sites of Zinc atom in the Crystal Structure of the Protein TM0936 From Thermotoga Maritima Complexed with Zn and S-Inosylhomocysteine (pdb code 2plm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Protein TM0936 From Thermotoga Maritima Complexed with Zn and S-Inosylhomocysteine, PDB code: 2plm:

Zinc binding site 1 out of 1 in the Crystal Structure of the Protein TM0936 From Thermotoga Maritima Complexed with Zn and S-Inosylhomocysteine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Protein TM0936 From Thermotoga Maritima Complexed with Zn and S-Inosylhomocysteine within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn407 b:27.7 occ:1.00 O A:HOH409 2.0 29.3 1.0 NE2 A:HIS55 2.1 27.9 1.0 NE2 A:HIS57 2.2 23.0 1.0 NE2 A:HIS200 2.2 24.6 1.0 OD1 A:ASP279 2.3 26.6 1.0 CE1 A:HIS55 3.0 23.6 1.0 CE1 A:HIS57 3.1 23.8 1.0 CD2 A:HIS200 3.2 26.9 1.0 CD2 A:HIS57 3.2 25.8 1.0 CE1 A:HIS200 3.2 26.3 1.0 CD2 A:HIS55 3.2 24.7 1.0 CG A:ASP279 3.3 22.8 1.0 OD2 A:ASP279 3.6 28.4 1.0 C5 A:SIB408 3.8 34.3 1.0 N7 A:SIB408 3.9 32.7 1.0 C6 A:SIB408 4.1 36.9 1.0 ND1 A:HIS55 4.1 24.4 1.0 NE2 A:HIS228 4.2 37.9 1.0 ND1 A:HIS57 4.2 26.0 1.0 C4 A:SIB408 4.2 33.6 1.0 CG A:HIS57 4.3 26.6 1.0 CG A:HIS55 4.3 25.7 1.0 ND1 A:HIS200 4.3 26.4 1.0 CG A:HIS200 4.3 25.6 1.0 C8 A:SIB408 4.3 31.6 1.0 O6 A:SIB408 4.4 39.1 1.0 N9 A:SIB408 4.5 31.5 1.0 CB A:ASP279 4.5 23.5 1.0 N1 A:SIB408 4.6 37.1 1.0 CA A:ASP279 4.7 23.5 1.0 N3 A:SIB408 4.7 34.5 1.0 O A:HOH442 4.7 29.9 1.0 CE1 A:HIS228 4.8 37.3 1.0 C2 A:SIB408 4.9 34.3 1.0

J.C.Hermann, R.Marti-Arbona, A.A.Fedorov, E.Fedorov, S.C.Almo, B.K.Shoichet, F.M.Raushel. Structure-Based Activity Prediction For An Enzyme of Unknown Function Nature V. 448 775 2007.
ISSN: ISSN 0028-0836
PubMed: 17603473
DOI: 10.1038/NATURE05981