Zinc in PDB 2pig: Crystal Structure of Ydck From Salmonella Cholerae at 2.38 A Resolution. Northeast Structural Genomics Target SCR6

The structure of Crystal Structure of Ydck From Salmonella Cholerae at 2.38 A Resolution. Northeast Structural Genomics Target SCR6, PDB code: 2pig was solved by J.Benach, Y.Chen, S.M.Vorobiev, J.Seetharaman, C.K.Ho, H.Janjua, K.Conover, L.-C.Ma, R.Xiao, T.B.Acton, G.T.Montelione, J.F.Hunt, L.Tong, Northeaststructural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.38
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	103.603, 103.603, 160.577, 90.00, 90.00, 90.00
R / Rfree (%)	22 / 26.9

The binding sites of Zinc atom in the Crystal Structure of Ydck From Salmonella Cholerae at 2.38 A Resolution. Northeast Structural Genomics Target SCR6 (pdb code 2pig). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of Ydck From Salmonella Cholerae at 2.38 A Resolution. Northeast Structural Genomics Target SCR6, PDB code: 2pig:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Crystal Structure of Ydck From Salmonella Cholerae at 2.38 A Resolution. Northeast Structural Genomics Target SCR6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Ydck From Salmonella Cholerae at 2.38 A Resolution. Northeast Structural Genomics Target SCR6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn335 b:34.4 occ:1.00 SG A:CYS205 2.3 17.9 1.0 CB A:CYS205 3.0 15.7 1.0 CD A:GLU183 3.6 24.5 1.0 OE1 A:GLU183 3.7 23.9 1.0 CA A:CYS205 3.8 15.8 1.0 CB A:GLU183 3.8 16.7 1.0 OE2 A:GLU183 3.8 22.9 1.0 O A:ILE204 3.9 14.6 1.0 CG A:GLU183 4.0 20.1 1.0 C A:ILE204 4.3 15.2 1.0 N A:CYS205 4.3 14.5 1.0 CE1 A:HIS184 4.5 29.7 1.0 ND1 A:HIS184 4.6 29.8 1.0 N A:GLU183 4.6 14.8 1.0 CA A:GLU183 4.8 15.1 1.0 O A:PHE181 4.8 15.6 1.0 N A:ILE204 5.0 13.5 1.0

Zinc binding site 2 out of 3 in the Crystal Structure of Ydck From Salmonella Cholerae at 2.38 A Resolution. Northeast Structural Genomics Target SCR6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Ydck From Salmonella Cholerae at 2.38 A Resolution. Northeast Structural Genomics Target SCR6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn336 b:44.7 occ:1.00 OG1 A:THR220 3.3 16.9 1.0 OE2 A:GLU241 3.6 22.9 1.0 N A:THR220 3.7 15.8 1.0 O B:HOH3062 3.8 8.2 1.0 CG B:LYS198 3.9 34.2 1.0 N B:LYS198 4.0 23.7 1.0 CB B:ASP197 4.0 15.3 1.0 CG2 A:THR220 4.1 14.1 1.0 CB A:THR220 4.1 15.4 1.0 CA A:GLY219 4.3 14.6 1.0 CD A:GLU241 4.4 22.1 1.0 CA B:ASP197 4.5 18.6 1.0 C A:GLY219 4.5 15.6 1.0 CA A:THR220 4.5 16.2 1.0 CB B:LYS198 4.5 28.0 1.0 O B:HOH3075 4.6 22.2 1.0 OE1 A:GLU241 4.7 21.1 1.0 C B:ASP197 4.7 20.1 1.0 CA B:LYS198 4.9 25.4 1.0

Zinc binding site 3 out of 3 in the Crystal Structure of Ydck From Salmonella Cholerae at 2.38 A Resolution. Northeast Structural Genomics Target SCR6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Ydck From Salmonella Cholerae at 2.38 A Resolution. Northeast Structural Genomics Target SCR6 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn335 b:41.6 occ:1.00 OG1 B:THR220 3.5 21.6 1.0 OE2 B:GLU241 3.5 22.0 1.0 N B:THR220 3.6 22.2 1.0 O A:HOH3088 3.8 14.2 1.0 O B:HOH3046 3.9 18.8 1.0 N A:LYS198 4.1 22.2 1.0 CG A:LYS198 4.1 29.2 1.0 CA B:GLY219 4.2 21.3 1.0 CB A:ASP197 4.2 15.5 1.0 CG2 B:THR220 4.3 21.5 1.0 CB B:THR220 4.3 21.2 1.0 C B:GLY219 4.4 21.7 1.0 CD B:GLU241 4.5 20.3 1.0 CA B:THR220 4.6 23.4 1.0 CA A:ASP197 4.6 17.6 1.0 CB A:LYS198 4.6 26.0 1.0 OE1 B:GLU241 4.8 18.7 1.0 C A:ASP197 4.9 19.8 1.0

J.Benach, Y.Chen, S.M.Vorobiev, J.Seetharaman, C.K.Ho, H.Janjua, K.Conover, L.-C.Ma, R.Xiao, T.B.Acton, G.T.Montelione, J.F.Hunt, L.Tong. Crystal Structure of Ydck From Salmonella Cholerae at 2.38 A Resolution. To Be Published.