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Zinc in PDB 2mke: Solution Structure of CPEB1 Zz Domain in the Free State

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of CPEB1 Zz Domain in the Free State (pdb code 2mke). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of CPEB1 Zz Domain in the Free State, PDB code: 2mke:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2mke

Go back to Zinc Binding Sites List in 2mke
Zinc binding site 1 out of 2 in the Solution Structure of CPEB1 Zz Domain in the Free State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of CPEB1 Zz Domain in the Free State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:0.0
occ:1.00
SG A:CYS457 2.0 0.0 1.0
SG A:CYS435 2.0 0.0 1.0
SG A:CYS460 2.0 0.0 1.0
SG A:CYS438 2.0 0.0 1.0
HB3 A:CYS435 2.5 0.0 1.0
H A:CYS457 2.7 0.0 1.0
CB A:CYS435 2.7 0.0 1.0
H A:CYS460 3.1 0.0 1.0
HB2 A:CYS435 3.1 0.0 1.0
HB3 A:CYS457 3.1 0.0 1.0
CB A:CYS457 3.1 0.0 1.0
N A:CYS457 3.3 0.0 1.0
HB3 A:CYS460 3.4 0.0 1.0
CB A:CYS460 3.4 0.0 1.0
HB2 A:GLN441 3.4 0.0 1.0
HA A:PHE456 3.7 0.0 1.0
CB A:CYS438 3.7 0.0 1.0
CA A:CYS457 3.8 0.0 1.0
H A:CYS438 3.8 0.0 1.0
HB2 A:SER459 3.9 0.0 1.0
HB3 A:CYS438 3.9 0.0 1.0
N A:CYS460 4.0 0.0 1.0
HB2 A:CYS457 4.0 0.0 1.0
CA A:CYS435 4.1 0.0 1.0
HB2 A:CYS460 4.1 0.0 1.0
C A:PHE456 4.1 0.0 1.0
HA A:CYS435 4.2 0.0 1.0
H A:SER440 4.2 0.0 1.0
H A:GLN441 4.2 0.0 1.0
H A:SER439 4.3 0.0 1.0
CA A:CYS460 4.3 0.0 1.0
HB2 A:CYS438 4.3 0.0 1.0
CA A:PHE456 4.4 0.0 1.0
C A:CYS457 4.4 0.0 1.0
CB A:GLN441 4.5 0.0 1.0
N A:CYS438 4.5 0.0 1.0
H A:SER459 4.5 0.0 1.0
O A:CYS457 4.6 0.0 1.0
CA A:CYS438 4.6 0.0 1.0
HB3 A:PHE456 4.7 0.0 1.0
H A:ILE437 4.7 0.0 1.0
HA A:CYS457 4.7 0.0 1.0
HD1 A:PHE456 4.7 0.0 1.0
HA2 A:GLY443 4.7 0.0 1.0
HG3 A:GLN441 4.7 0.0 1.0
H A:CYS435 4.7 0.0 1.0
N A:SER439 4.8 0.0 1.0
HB A:ILE437 4.8 0.0 1.0
N A:GLN441 4.9 0.0 1.0
H A:TRP461 4.9 0.0 1.0
HG2 A:GLN441 4.9 0.0 1.0
N A:CYS435 4.9 0.0 1.0
CB A:SER459 4.9 0.0 1.0
H A:GLY443 5.0 0.0 1.0
C A:CYS438 5.0 0.0 1.0
CG A:GLN441 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2mke

Go back to Zinc Binding Sites List in 2mke
Zinc binding site 2 out of 2 in the Solution Structure of CPEB1 Zz Domain in the Free State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of CPEB1 Zz Domain in the Free State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn502

b:0.0
occ:1.00
SG A:CYS447 2.0 0.0 1.0
SG A:CYS452 2.0 0.0 1.0
NE2 A:HIS465 2.0 0.0 1.0
ND1 A:HIS473 2.0 0.0 1.0
CE1 A:HIS473 2.9 0.0 1.0
CE1 A:HIS465 2.9 0.0 1.0
CB A:CYS452 3.0 0.0 1.0
HB2 A:CYS452 3.0 0.0 1.0
HE1 A:HIS473 3.1 0.0 1.0
CG A:HIS473 3.1 0.0 1.0
HE1 A:HIS465 3.1 0.0 1.0
CD2 A:HIS465 3.1 0.0 1.0
HB3 A:CYS452 3.3 0.0 1.0
CB A:CYS447 3.3 0.0 1.0
HB3 A:HIS473 3.3 0.0 1.0
HD2 A:HIS465 3.4 0.0 1.0
HB2 A:ASP449 3.5 0.0 1.0
HB3 A:CYS447 3.6 0.0 1.0
HB2 A:CYS447 3.6 0.0 1.0
CB A:HIS473 3.6 0.0 1.0
HB2 A:HIS473 3.8 0.0 1.0
NE2 A:HIS473 4.0 0.0 1.0
HD13 A:LEU470 4.0 0.0 1.0
ND1 A:HIS465 4.1 0.0 1.0
CD2 A:HIS473 4.1 0.0 1.0
CG A:HIS465 4.2 0.0 1.0
HB3 A:LEU470 4.2 0.0 1.0
HG21 A:VAL451 4.2 0.0 1.0
H A:ASP449 4.3 0.0 1.0
HB3 A:ARG464 4.4 0.0 1.0
CA A:CYS452 4.4 0.0 1.0
CB A:ASP449 4.5 0.0 1.0
CA A:CYS447 4.6 0.0 1.0
OD1 A:ASP449 4.6 0.0 1.0
HH2 A:TRP461 4.7 0.0 1.0
N A:CYS452 4.7 0.0 1.0
CH2 A:TRP461 4.7 0.0 1.0
HA A:CYS447 4.7 0.0 1.0
HA A:CYS452 4.8 0.0 1.0
H A:CYS452 4.8 0.0 1.0
HE2 A:PHE456 4.8 0.0 1.0
HE2 A:HIS473 4.9 0.0 1.0
CZ3 A:TRP461 4.9 0.0 1.0
CG A:ASP449 4.9 0.0 1.0
HG23 A:VAL451 5.0 0.0 1.0
H A:PHE453 5.0 0.0 1.0
HD1 A:HIS465 5.0 0.0 1.0

Reference:

T.Afroz, L.Skrisovska, E.Belloc, J.Guillen-Boixet, R.Mendez, F.H.-T.Allain. A Fly Trap Mechanism Provides Sequence-Specific Rna Recognition By Cpeb Proteins Genes Dev. V. 28 1498 2014.
ISSN: ISSN 0890-9369
PubMed: 24990967
DOI: 10.1101/GAD.241133.114
Page generated: Wed Dec 16 03:40:17 2020

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