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Zinc in PDB 2m9y: Solution Structure of the Catalytic Domain of Hhari

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Catalytic Domain of Hhari (pdb code 2m9y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Catalytic Domain of Hhari, PDB code: 2m9y:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2m9y

Go back to Zinc Binding Sites List in 2m9y
Zinc binding site 1 out of 2 in the Solution Structure of the Catalytic Domain of Hhari


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Catalytic Domain of Hhari within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS347 2.2 0.0 1.0
SG A:CYS344 2.2 0.0 1.0
SG A:CYS362 2.3 0.0 1.0
SG A:CYS367 2.3 0.0 1.0
HB3 A:CYS367 2.8 0.0 1.0
HB2 A:CYS362 2.9 0.0 1.0
CB A:CYS367 3.0 0.0 1.0
H A:CYS347 3.1 0.0 1.0
CB A:CYS344 3.1 0.0 1.0
HG11 A:VAL349 3.1 0.0 1.0
HB2 A:CYS344 3.1 0.0 1.0
HB3 A:CYS344 3.2 0.0 1.0
CB A:CYS362 3.2 0.0 1.0
HB2 A:CYS367 3.2 0.0 1.0
HB3 A:ASN364 3.3 0.0 1.0
HB3 A:LYS346 3.5 0.0 1.0
HG2 A:LYS346 3.6 0.0 1.0
HB3 A:CYS362 3.6 0.0 1.0
CB A:CYS347 3.6 0.0 1.0
HB3 A:CYS347 3.7 0.0 1.0
HD21 A:ASN364 3.7 0.0 1.0
N A:CYS347 3.8 0.0 1.0
H A:ALA369 3.8 0.0 1.0
HG12 A:VAL349 3.8 0.0 1.0
HB3 A:ALA369 3.9 0.0 1.0
CG1 A:VAL349 3.9 0.0 1.0
HE2 A:PHE371 4.0 0.0 1.0
H A:LYS368 4.1 0.0 1.0
CA A:CYS347 4.3 0.0 1.0
H A:LYS346 4.3 0.0 1.0
CB A:ASN364 4.3 0.0 1.0
CB A:LYS346 4.4 0.0 1.0
CG A:LYS346 4.4 0.0 1.0
H A:ASN364 4.4 0.0 1.0
H A:VAL349 4.4 0.0 1.0
H A:HIS348 4.4 0.0 1.0
HB2 A:ASN364 4.4 0.0 1.0
HD2 A:LYS346 4.4 0.0 1.0
HB2 A:CYS347 4.4 0.0 1.0
CA A:CYS367 4.5 0.0 1.0
HG13 A:VAL349 4.5 0.0 1.0
CA A:CYS362 4.5 0.0 1.0
HA A:CYS362 4.6 0.0 1.0
CA A:CYS344 4.6 0.0 1.0
ND2 A:ASN364 4.6 0.0 1.0
N A:LYS368 4.6 0.0 1.0
HB1 A:ALA369 4.7 0.0 1.0
N A:ALA369 4.7 0.0 1.0
CB A:ALA369 4.8 0.0 1.0
C A:LYS346 4.8 0.0 1.0
HB A:VAL349 4.8 0.0 1.0
N A:HIS348 4.9 0.0 1.0
H A:ARG363 4.9 0.0 1.0
HA A:CYS344 4.9 0.0 1.0
C A:CYS367 4.9 0.0 1.0
CE2 A:PHE371 4.9 0.0 1.0
HA A:CYS367 4.9 0.0 1.0
C A:CYS347 5.0 0.0 1.0
CD A:LYS346 5.0 0.0 1.0
CA A:LYS346 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2m9y

Go back to Zinc Binding Sites List in 2m9y
Zinc binding site 2 out of 2 in the Solution Structure of the Catalytic Domain of Hhari


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Catalytic Domain of Hhari within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:0.0
occ:1.00
SG A:CYS375 2.2 0.0 1.0
NE2 A:HIS382 2.2 0.0 1.0
SG A:CYS389 2.2 0.0 1.0
SG A:CYS372 2.2 0.0 1.0
H A:CYS375 2.9 0.0 1.0
CD2 A:HIS382 3.0 0.0 1.0
HB2 A:CYS389 3.0 0.0 1.0
HB3 A:CYS372 3.0 0.0 1.0
HB A:VAL374 3.0 0.0 1.0
CE1 A:HIS382 3.1 0.0 1.0
CB A:CYS372 3.2 0.0 1.0
CB A:CYS389 3.2 0.0 1.0
HD2 A:HIS382 3.3 0.0 1.0
HB3 A:CYS375 3.4 0.0 1.0
HE1 A:HIS382 3.4 0.0 1.0
CB A:CYS375 3.4 0.0 1.0
HB2 A:CYS372 3.5 0.0 1.0
HB3 A:CYS389 3.6 0.0 1.0
N A:CYS375 3.7 0.0 1.0
HE1 A:TYR387 4.0 0.0 1.0
CG A:HIS382 4.0 0.0 1.0
ND1 A:HIS382 4.1 0.0 1.0
CB A:VAL374 4.1 0.0 1.0
CA A:CYS375 4.2 0.0 1.0
HB2 A:CYS375 4.3 0.0 1.0
H A:GLY377 4.3 0.0 1.0
HG12 A:VAL374 4.5 0.0 1.0
HG13 A:VAL374 4.5 0.0 1.0
CA A:CYS389 4.6 0.0 1.0
CA A:CYS372 4.6 0.0 1.0
CG1 A:VAL374 4.6 0.0 1.0
HA A:CYS389 4.6 0.0 1.0
O A:CYS372 4.6 0.0 1.0
C A:VAL374 4.7 0.0 1.0
H A:VAL374 4.7 0.0 1.0
H A:LEU376 4.8 0.0 1.0
H A:ASN390 4.8 0.0 1.0
CA A:VAL374 4.9 0.0 1.0
HG23 A:VAL374 4.9 0.0 1.0
C A:CYS372 4.9 0.0 1.0
HD1 A:HIS382 4.9 0.0 1.0
CE1 A:TYR387 4.9 0.0 1.0
CG2 A:VAL374 4.9 0.0 1.0
HG21 A:VAL374 5.0 0.0 1.0
C A:CYS375 5.0 0.0 1.0
HD1 A:TYR387 5.0 0.0 1.0

Reference:

D.E.Spratt, P.Mercier, G.S.Shaw. Structure of the Hhari Catalytic Domain Shows Glimpses of A Hect E3 Ligase. Plos One V. 8 74047 2013.
ISSN: ESSN 1932-6203
PubMed: 24058416
DOI: 10.1371/JOURNAL.PONE.0074047
Page generated: Wed Dec 16 03:39:54 2020

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