Atomistry » Zinc » PDB 2m0f-2mlr » 2m6n
Atomistry »
  Zinc »
    PDB 2m0f-2mlr »
      2m6n »

Zinc in PDB 2m6n: 3D Solution Structure of EMI1 (Early Mitotic Inhibitor 1)

Zinc Binding Sites:

The binding sites of Zinc atom in the 3D Solution Structure of EMI1 (Early Mitotic Inhibitor 1) (pdb code 2m6n). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the 3D Solution Structure of EMI1 (Early Mitotic Inhibitor 1), PDB code: 2m6n:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2m6n

Go back to Zinc Binding Sites List in 2m6n
Zinc binding site 1 out of 2 in the 3D Solution Structure of EMI1 (Early Mitotic Inhibitor 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 3D Solution Structure of EMI1 (Early Mitotic Inhibitor 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:51.2
occ:1.00
HB2 A:ARG19 2.8 21.2 1.0
HB3 A:SER22 3.1 60.2 1.0
HB3 A:CYS17 3.2 11.1 1.0
HG A:CYS35 3.2 20.1 1.0
SG A:CYS35 3.2 73.4 1.0
SG A:CYS17 3.2 12.2 1.0
SG A:CYS20 3.2 71.4 1.0
SG A:CYS40 3.2 3.3 1.0
HB2 A:CYS40 3.3 61.5 1.0
H A:CYS20 3.3 12.3 1.0
HG A:CYS20 3.5 41.1 1.0
CB A:CYS17 3.5 41.2 1.0
HB2 A:CYS17 3.5 25.3 1.0
HD3 A:ARG37 3.6 43.4 1.0
CB A:CYS40 3.8 52.5 1.0
CB A:ARG19 3.8 13.2 1.0
HG3 A:ARG19 3.9 20.4 1.0
HE1 A:PHE42 3.9 61.2 1.0
HD3 A:ARG19 4.0 54.2 1.0
HB3 A:ARG37 4.0 32.1 1.0
CB A:SER22 4.1 40.3 1.0
HB3 A:CYS40 4.1 24.2 1.0
HB2 A:ARG37 4.2 43.3 1.0
HB3 A:ARG19 4.2 4.4 1.0
N A:CYS20 4.2 40.2 1.0
H A:SER22 4.2 3.1 1.0
CG A:ARG19 4.3 53.3 1.0
HB2 A:SER22 4.3 3.3 1.0
H A:ARG19 4.3 70.0 1.0
HG A:CYS40 4.4 13.4 1.0
CD A:ARG37 4.5 15.4 1.0
HG A:CYS17 4.5 23.1 1.0
CB A:ARG37 4.5 54.4 1.0
CD A:ARG19 4.5 14.4 1.0
HD2 A:ARG37 4.6 34.1 1.0
HB2 A:CYS35 4.6 51.2 1.0
CB A:CYS35 4.6 1.3 1.0
OG A:SER22 4.7 55.0 1.0
HG A:SER22 4.7 23.0 1.0
HD2 A:ARG19 4.7 53.4 1.0
CB A:CYS20 4.7 44.3 1.0
HH11 A:ARG37 4.8 2.4 1.0
CA A:ARG19 4.8 51.2 1.0
HG2 A:ARG37 4.9 20.2 1.0
N A:SER22 4.9 72.4 1.0
CG A:ARG37 4.9 3.4 1.0
HB3 A:CYS35 5.0 23.2 1.0
CA A:CYS20 5.0 64.1 1.0
H A:ASN21 5.0 5.0 1.0
CE1 A:PHE42 5.0 70.5 1.0
N A:ARG19 5.0 35.1 1.0

Zinc binding site 2 out of 2 in 2m6n

Go back to Zinc Binding Sites List in 2m6n
Zinc binding site 2 out of 2 in the 3D Solution Structure of EMI1 (Early Mitotic Inhibitor 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 3D Solution Structure of EMI1 (Early Mitotic Inhibitor 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn102

b:51.1
occ:1.00
HB2 A:CYS45 2.9 4.4 1.0
NE2 A:HIS53 3.0 3.2 1.0
HG A:CYS45 3.1 54.2 1.0
HD2 A:HIS53 3.2 21.2 1.0
SG A:CYS48 3.2 44.0 1.0
SG A:CYS58 3.2 23.3 1.0
SG A:CYS45 3.2 72.2 1.0
CB A:CYS45 3.4 65.3 1.0
CD2 A:HIS53 3.4 32.4 1.0
HB3 A:CYS45 3.4 22.2 1.0
HG A:CYS48 3.6 24.4 1.0
HG A:CYS58 3.6 35.2 1.0
O A:ASN51 4.1 45.3 1.0
CE1 A:HIS53 4.2 25.1 1.0
HA A:TYR52 4.2 61.0 1.0
H A:HIS53 4.5 34.0 1.0
HB2 A:LYS47 4.6 30.0 1.0
H A:CYS48 4.6 45.5 1.0
HE1 A:HIS53 4.6 34.4 1.0
CG A:HIS53 4.7 51.5 1.0
CB A:CYS48 4.8 21.1 1.0
HB3 A:CYS48 4.8 22.4 1.0
CB A:CYS58 4.8 64.1 1.0
H A:CYS45 4.9 45.2 1.0
CA A:CYS45 4.9 33.2 1.0
HB2 A:CYS58 4.9 3.4 1.0
ND1 A:HIS53 5.0 23.3 1.0

Reference:

J.J.Frye, N.G.Brown, G.Petzold, E.R.Watson, C.R.Grace, A.Nourse, M.A.Jarvis, R.W.Kriwacki, J.M.Peters, H.Stark, B.A.Schulman. Electron Microscopy Structure of Human Apc/C(CDH1)-EMI1 Reveals Multimodal Mechanism of E3 Ligase Shutdown. Nat.Struct.Mol.Biol. V. 20 827 2013.
ISSN: ISSN 1545-9993
PubMed: 23708605
DOI: 10.1038/NSMB.2593
Page generated: Wed Dec 16 03:39:38 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy