Zinc in PDB 2m3h: Structure of Dido Phd Domain

The binding sites of Zinc atom in the Structure of Dido Phd Domain (pdb code 2m3h). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Dido Phd Domain, PDB code: 2m3h:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Dido Phd Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Dido Phd Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:20.5 occ:1.00 SG A:CYS12 2.1 71.2 1.0 SG A:CYS10 2.3 70.5 1.0 ND1 A:HIS32 2.4 51.3 1.0 SG A:CYS35 2.5 40.1 1.0 HB2 A:HIS32 2.8 62.3 1.0 HB3 A:CYS10 3.1 45.3 1.0 H A:CYS12 3.2 0.0 1.0 HB3 A:CYS12 3.3 44.4 1.0 CG A:HIS32 3.3 32.0 1.0 CB A:CYS10 3.3 1.2 1.0 CB A:CYS12 3.4 14.2 1.0 CE1 A:HIS32 3.4 34.1 1.0 CB A:HIS32 3.5 33.2 1.0 HE1 A:HIS32 3.6 12.4 1.0 HB2 A:CYS35 3.7 62.4 1.0 CB A:CYS35 3.7 5.0 1.0 HB2 A:CYS10 3.8 24.1 1.0 N A:CYS12 4.0 64.4 1.0 HG12 A:ILE11 4.0 30.2 1.0 HB3 A:CYS35 4.1 65.2 1.0 HB3 A:HIS32 4.1 15.5 1.0 H A:HIS32 4.1 42.1 1.0 HB2 A:CYS12 4.1 64.1 1.0 HB2 A:GLN14 4.2 0.2 1.0 HG13 A:ILE11 4.2 43.1 1.0 CA A:CYS12 4.3 53.0 1.0 CD2 A:HIS32 4.5 64.3 1.0 H A:ILE11 4.5 1.4 1.0 NE2 A:HIS32 4.5 62.4 1.0 N A:HIS32 4.6 35.4 1.0 H A:ARG13 4.6 71.1 1.0 CA A:CYS10 4.6 30.4 1.0 CG1 A:ILE11 4.7 73.2 1.0 CA A:HIS32 4.7 23.5 1.0 N A:ILE11 4.7 40.4 1.0 H A:CYS35 4.8 23.3 1.0 C A:CYS10 4.8 51.4 1.0

Zinc binding site 2 out of 2 in the Structure of Dido Phd Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Dido Phd Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn102 b:64.5 occ:1.00 SG A:CYS55 2.2 4.0 1.0 SG A:CYS24 2.3 71.1 1.0 SG A:CYS27 2.4 43.0 1.0 SG A:CYS58 2.5 44.3 1.0 H A:CYS27 2.8 33.5 1.0 HB3 A:ARG26 2.9 12.3 1.0 HE1 A:PHE31 3.0 60.1 1.0 HB3 A:CYS24 3.2 45.1 1.0 HB2 A:CYS58 3.3 54.1 1.0 HB3 A:CYS27 3.3 73.4 1.0 CB A:CYS24 3.3 32.5 1.0 HZ A:PHE31 3.5 54.3 1.0 CB A:CYS27 3.5 41.4 1.0 CB A:CYS58 3.5 51.4 1.0 H A:CYS55 3.6 5.4 1.0 HB2 A:CYS24 3.6 40.1 1.0 N A:CYS27 3.6 63.0 1.0 CE1 A:PHE31 3.6 21.2 1.0 CB A:CYS55 3.8 21.3 1.0 CZ A:PHE31 3.8 22.4 1.0 CB A:ARG26 3.9 71.5 1.0 H A:CYS58 3.9 62.3 1.0 HB3 A:CYS55 3.9 24.4 1.0 HB2 A:ARG26 4.0 42.2 1.0 HG21 A:ILE54 4.1 24.2 1.0 CA A:CYS27 4.2 52.0 1.0 HB3 A:CYS58 4.2 40.1 1.0 N A:CYS55 4.2 72.4 1.0 HB2 A:CYS27 4.4 63.2 1.0 N A:CYS58 4.5 70.2 1.0 HB2 A:CYS55 4.5 54.1 1.0 HD2 A:ARG26 4.5 23.3 1.0 CA A:CYS55 4.6 0.4 1.0 C A:ARG26 4.6 23.4 1.0 H A:ARG26 4.6 73.1 1.0 HA A:ILE54 4.6 21.5 1.0 CA A:CYS58 4.6 32.0 1.0 H A:GLU28 4.6 31.1 1.0 CA A:ARG26 4.7 25.1 1.0 CD1 A:PHE31 4.7 14.3 1.0 CA A:CYS24 4.7 41.1 1.0 HB3 A:ASN57 4.7 2.4 1.0 HG3 A:ARG26 4.8 42.0 1.0 H A:GLU29 4.9 51.2 1.0 N A:ARG26 4.9 10.2 1.0 CG A:ARG26 4.9 22.4 1.0 HG23 A:ILE54 5.0 43.3 1.0 HB2 A:GLU29 5.0 11.2 1.0 HA A:CYS27 5.0 64.5 1.0 O A:CYS55 5.0 64.2 1.0

C.M.Santiveri, M.F.Garcia-Mayoral, J.M.Perez-Canadillas, M.A.Jimenez. uc(Nmr) Structure Note: Phd Domain From Death Inducer Obliterator Protein and Its Interaction with H3K4ME3. J.Biomol.uc(Nmr) V. 56 183 2013.
ISSN: ISSN 0925-2738
PubMed: 23579637
DOI: 10.1007/S10858-013-9726-X