Atomistry » Zinc » PDB 2m0f-2mlr » 2m3h
Atomistry »
  Zinc »
    PDB 2m0f-2mlr »
      2m3h »

Zinc in PDB 2m3h: Structure of Dido Phd Domain

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Dido Phd Domain (pdb code 2m3h). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Dido Phd Domain, PDB code: 2m3h:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2m3h

Go back to Zinc Binding Sites List in 2m3h
Zinc binding site 1 out of 2 in the Structure of Dido Phd Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Dido Phd Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:20.5
occ:1.00
SG A:CYS12 2.1 71.2 1.0
SG A:CYS10 2.3 70.5 1.0
ND1 A:HIS32 2.4 51.3 1.0
SG A:CYS35 2.5 40.1 1.0
HB2 A:HIS32 2.8 62.3 1.0
HB3 A:CYS10 3.1 45.3 1.0
H A:CYS12 3.2 0.0 1.0
HB3 A:CYS12 3.3 44.4 1.0
CG A:HIS32 3.3 32.0 1.0
CB A:CYS10 3.3 1.2 1.0
CB A:CYS12 3.4 14.2 1.0
CE1 A:HIS32 3.4 34.1 1.0
CB A:HIS32 3.5 33.2 1.0
HE1 A:HIS32 3.6 12.4 1.0
HB2 A:CYS35 3.7 62.4 1.0
CB A:CYS35 3.7 5.0 1.0
HB2 A:CYS10 3.8 24.1 1.0
N A:CYS12 4.0 64.4 1.0
HG12 A:ILE11 4.0 30.2 1.0
HB3 A:CYS35 4.1 65.2 1.0
HB3 A:HIS32 4.1 15.5 1.0
H A:HIS32 4.1 42.1 1.0
HB2 A:CYS12 4.1 64.1 1.0
HB2 A:GLN14 4.2 0.2 1.0
HG13 A:ILE11 4.2 43.1 1.0
CA A:CYS12 4.3 53.0 1.0
CD2 A:HIS32 4.5 64.3 1.0
H A:ILE11 4.5 1.4 1.0
NE2 A:HIS32 4.5 62.4 1.0
N A:HIS32 4.6 35.4 1.0
H A:ARG13 4.6 71.1 1.0
CA A:CYS10 4.6 30.4 1.0
CG1 A:ILE11 4.7 73.2 1.0
CA A:HIS32 4.7 23.5 1.0
N A:ILE11 4.7 40.4 1.0
H A:CYS35 4.8 23.3 1.0
C A:CYS10 4.8 51.4 1.0

Zinc binding site 2 out of 2 in 2m3h

Go back to Zinc Binding Sites List in 2m3h
Zinc binding site 2 out of 2 in the Structure of Dido Phd Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Dido Phd Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn102

b:64.5
occ:1.00
SG A:CYS55 2.2 4.0 1.0
SG A:CYS24 2.3 71.1 1.0
SG A:CYS27 2.4 43.0 1.0
SG A:CYS58 2.5 44.3 1.0
H A:CYS27 2.8 33.5 1.0
HB3 A:ARG26 2.9 12.3 1.0
HE1 A:PHE31 3.0 60.1 1.0
HB3 A:CYS24 3.2 45.1 1.0
HB2 A:CYS58 3.3 54.1 1.0
HB3 A:CYS27 3.3 73.4 1.0
CB A:CYS24 3.3 32.5 1.0
HZ A:PHE31 3.5 54.3 1.0
CB A:CYS27 3.5 41.4 1.0
CB A:CYS58 3.5 51.4 1.0
H A:CYS55 3.6 5.4 1.0
HB2 A:CYS24 3.6 40.1 1.0
N A:CYS27 3.6 63.0 1.0
CE1 A:PHE31 3.6 21.2 1.0
CB A:CYS55 3.8 21.3 1.0
CZ A:PHE31 3.8 22.4 1.0
CB A:ARG26 3.9 71.5 1.0
H A:CYS58 3.9 62.3 1.0
HB3 A:CYS55 3.9 24.4 1.0
HB2 A:ARG26 4.0 42.2 1.0
HG21 A:ILE54 4.1 24.2 1.0
CA A:CYS27 4.2 52.0 1.0
HB3 A:CYS58 4.2 40.1 1.0
N A:CYS55 4.2 72.4 1.0
HB2 A:CYS27 4.4 63.2 1.0
N A:CYS58 4.5 70.2 1.0
HB2 A:CYS55 4.5 54.1 1.0
HD2 A:ARG26 4.5 23.3 1.0
CA A:CYS55 4.6 0.4 1.0
C A:ARG26 4.6 23.4 1.0
H A:ARG26 4.6 73.1 1.0
HA A:ILE54 4.6 21.5 1.0
CA A:CYS58 4.6 32.0 1.0
H A:GLU28 4.6 31.1 1.0
CA A:ARG26 4.7 25.1 1.0
CD1 A:PHE31 4.7 14.3 1.0
CA A:CYS24 4.7 41.1 1.0
HB3 A:ASN57 4.7 2.4 1.0
HG3 A:ARG26 4.8 42.0 1.0
H A:GLU29 4.9 51.2 1.0
N A:ARG26 4.9 10.2 1.0
CG A:ARG26 4.9 22.4 1.0
HG23 A:ILE54 5.0 43.3 1.0
HB2 A:GLU29 5.0 11.2 1.0
HA A:CYS27 5.0 64.5 1.0
O A:CYS55 5.0 64.2 1.0

Reference:

C.M.Santiveri, M.F.Garcia-Mayoral, J.M.Perez-Canadillas, M.A.Jimenez. uc(Nmr) Structure Note: Phd Domain From Death Inducer Obliterator Protein and Its Interaction with H3K4ME3. J.Biomol.uc(Nmr) V. 56 183 2013.
ISSN: ISSN 0925-2738
PubMed: 23579637
DOI: 10.1007/S10858-013-9726-X
Page generated: Wed Dec 16 03:39:16 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy