Zinc in PDB 2m13: The Zz Domain of Cytoplasmic Polyadenylation Element Binding Protein 1 (CPEB1)

The binding sites of Zinc atom in the The Zz Domain of Cytoplasmic Polyadenylation Element Binding Protein 1 (CPEB1) (pdb code 2m13). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Zz Domain of Cytoplasmic Polyadenylation Element Binding Protein 1 (CPEB1), PDB code: 2m13:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the The Zz Domain of Cytoplasmic Polyadenylation Element Binding Protein 1 (CPEB1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Zz Domain of Cytoplasmic Polyadenylation Element Binding Protein 1 (CPEB1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:0.0 occ:1.00 SG A:CYS518 2.3 0.0 1.0 SG A:CYS540 2.3 0.0 1.0 SG A:CYS515 2.3 0.0 1.0 SG A:CYS537 2.3 0.0 1.0 HB3 A:CYS515 2.9 0.0 1.0 H A:CYS537 2.9 0.0 1.0 CB A:CYS515 3.1 0.0 1.0 H A:CYS518 3.1 0.0 1.0 HB2 A:CYS537 3.2 0.0 1.0 HB3 A:CYS518 3.2 0.0 1.0 HB2 A:CYS540 3.3 0.0 1.0 CB A:CYS537 3.4 0.0 1.0 CB A:CYS540 3.4 0.0 1.0 HB2 A:CYS515 3.4 0.0 1.0 CB A:CYS518 3.4 0.0 1.0 HB A:ILE517 3.5 0.0 1.0 HB3 A:CYS540 3.7 0.0 1.0 N A:CYS537 3.8 0.0 1.0 N A:CYS518 3.9 0.0 1.0 CA A:CYS537 4.2 0.0 1.0 HB3 A:CYS537 4.2 0.0 1.0 HB2 A:CYS518 4.2 0.0 1.0 HA A:PHE536 4.2 0.0 1.0 CA A:CYS518 4.3 0.0 1.0 H A:CYS540 4.5 0.0 1.0 H A:SER519 4.5 0.0 1.0 CA A:CYS515 4.5 0.0 1.0 CB A:ILE517 4.6 0.0 1.0 O A:GLN521 4.6 0.0 1.0 H A:ILE517 4.7 0.0 1.0 H A:SER520 4.7 0.0 1.0 O A:CYS515 4.8 0.0 1.0 HG21 A:ILE517 4.8 0.0 1.0 CA A:CYS540 4.8 0.0 1.0 H A:GLN521 4.8 0.0 1.0 C A:PHE536 4.8 0.0 1.0 C A:CYS515 4.9 0.0 1.0 HB2 A:SER520 4.9 0.0 1.0 HA A:CYS537 4.9 0.0 1.0 C A:ILE517 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the The Zz Domain of Cytoplasmic Polyadenylation Element Binding Protein 1 (CPEB1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Zz Domain of Cytoplasmic Polyadenylation Element Binding Protein 1 (CPEB1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn602 b:0.0 occ:1.00 ND1 A:HIS553 2.0 0.0 1.0 NE2 A:HIS545 2.0 0.0 1.0 SG A:CYS527 2.3 0.0 1.0 SG A:CYS532 2.3 0.0 1.0 CD2 A:HIS545 2.8 0.0 1.0 CE1 A:HIS553 2.9 0.0 1.0 HD2 A:HIS545 2.9 0.0 1.0 HE1 A:HIS553 3.1 0.0 1.0 HB2 A:CYS532 3.1 0.0 1.0 CG A:HIS553 3.1 0.0 1.0 CE1 A:HIS545 3.2 0.0 1.0 HB3 A:HIS553 3.3 0.0 1.0 CB A:CYS532 3.3 0.0 1.0 HD22 A:LEU550 3.5 0.0 1.0 CB A:CYS527 3.5 0.0 1.0 HB2 A:CYS527 3.6 0.0 1.0 HE1 A:HIS545 3.6 0.0 1.0 HB3 A:CYS527 3.7 0.0 1.0 CB A:HIS553 3.7 0.0 1.0 HB3 A:CYS532 3.7 0.0 1.0 HB3 A:ASP529 3.8 0.0 1.0 HB2 A:HIS553 3.9 0.0 1.0 CG A:HIS545 4.1 0.0 1.0 NE2 A:HIS553 4.1 0.0 1.0 HG3 A:ARG544 4.1 0.0 1.0 CD2 A:HIS553 4.2 0.0 1.0 HE1 A:PHE536 4.2 0.0 1.0 ND1 A:HIS545 4.2 0.0 1.0 HE A:ARG544 4.2 0.0 1.0 HB3 A:LEU550 4.3 0.0 1.0 HB2 A:ASP529 4.4 0.0 1.0 HG2 A:ARG544 4.4 0.0 1.0 HH2 A:TRP541 4.4 0.0 1.0 H A:CYS532 4.6 0.0 1.0 CD2 A:LEU550 4.6 0.0 1.0 CB A:ASP529 4.6 0.0 1.0 CH2 A:TRP541 4.6 0.0 1.0 CA A:CYS532 4.7 0.0 1.0 HB A:VAL531 4.8 0.0 1.0 CE1 A:PHE536 4.8 0.0 1.0 HG13 A:VAL531 4.8 0.0 1.0 CG A:ARG544 4.8 0.0 1.0 N A:CYS532 4.9 0.0 1.0 CA A:CYS527 4.9 0.0 1.0 CZ2 A:TRP541 4.9 0.0 1.0 H A:ASP529 4.9 0.0 1.0 HZ2 A:TRP541 4.9 0.0 1.0 HE2 A:HIS553 5.0 0.0 1.0 H A:PHE533 5.0 0.0 1.0 HG A:LEU550 5.0 0.0 1.0

D.J.Merkel, S.B.Wells, B.C.Hilburn, F.Elazzouzi, G.C.Perez-Alvarado, B.M.Lee. The C-Terminal Region of Cytoplasmic Polyadenylation Element Binding Protein Is A Zz Domain with Potential For Protein-Protein Interactions. J.Mol.Biol. V. 425 2015 2013.
ISSN: ISSN 0022-2836
PubMed: 23500490
DOI: 10.1016/J.JMB.2013.03.009