Atomistry » Zinc » PDB 2lgk-2m0e » 2lxh
Atomistry »
  Zinc »
    PDB 2lgk-2m0e »
      2lxh »

Zinc in PDB 2lxh: uc(Nmr) Structure of the Ring Domain in Ubiquitin Ligase GP78

Zinc Binding Sites:

The binding sites of Zinc atom in the uc(Nmr) Structure of the Ring Domain in Ubiquitin Ligase GP78 (pdb code 2lxh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the uc(Nmr) Structure of the Ring Domain in Ubiquitin Ligase GP78, PDB code: 2lxh:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2lxh

Go back to Zinc Binding Sites List in 2lxh
Zinc binding site 1 out of 2 in the uc(Nmr) Structure of the Ring Domain in Ubiquitin Ligase GP78


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Structure of the Ring Domain in Ubiquitin Ligase GP78 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn900

b:0.0
occ:1.00
ND1 C:HIS361 2.1 0.0 1.0
SG C:CYS341 2.2 0.0 1.0
SG C:CYS364 2.3 0.0 1.0
SG C:CYS344 2.4 0.0 1.0
CE1 C:HIS361 2.7 0.0 1.0
CG C:HIS361 2.9 0.0 1.0
HB2 C:CYS341 2.9 0.0 1.0
HB2 C:HIS361 3.0 0.0 1.0
HE1 C:HIS361 3.0 0.0 1.0
CB C:CYS341 3.1 0.0 1.0
CB C:CYS364 3.5 0.0 1.0
CB C:HIS361 3.5 0.0 1.0
HB2 C:CYS364 3.5 0.0 1.0
HB3 C:CYS341 3.5 0.0 1.0
H C:HIS361 3.7 0.0 1.0
NE2 C:HIS361 3.7 0.0 1.0
H C:CYS344 3.7 0.0 1.0
CD2 C:HIS361 3.7 0.0 1.0
HB3 C:CYS364 3.8 0.0 1.0
CB C:CYS344 3.8 0.0 1.0
HB3 C:CYS344 3.8 0.0 1.0
HB3 C:HIS361 4.2 0.0 1.0
O C:TRP345 4.4 0.0 1.0
CA C:CYS341 4.4 0.0 1.0
HA C:CYS341 4.4 0.0 1.0
N C:HIS361 4.4 0.0 1.0
N C:CYS344 4.5 0.0 1.0
HE2 C:HIS361 4.5 0.0 1.0
H C:CYS364 4.6 0.0 1.0
HB2 C:CYS344 4.6 0.0 1.0
CA C:CYS344 4.6 0.0 1.0
CA C:HIS361 4.6 0.0 1.0
HD2 C:HIS361 4.7 0.0 1.0
HB C:ILE343 4.7 0.0 1.0
HG3 C:MET348 4.7 0.0 1.0
CA C:CYS364 4.8 0.0 1.0
H C:TRP345 4.8 0.0 1.0
C C:CYS344 4.9 0.0 1.0
H C:ILE343 4.9 0.0 1.0
N C:TRP345 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2lxh

Go back to Zinc Binding Sites List in 2lxh
Zinc binding site 2 out of 2 in the uc(Nmr) Structure of the Ring Domain in Ubiquitin Ligase GP78


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Structure of the Ring Domain in Ubiquitin Ligase GP78 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn901

b:0.0
occ:1.00
ND1 C:HIS358 2.1 0.0 1.0
SG C:CYS375 2.2 0.0 1.0
SG C:CYS356 2.2 0.0 1.0
HE1 C:HIS358 2.3 0.0 1.0
SG C:CYS378 2.4 0.0 1.0
CE1 C:HIS358 2.4 0.0 1.0
H C:CYS378 2.7 0.0 1.0
HB C:THR377 3.0 0.0 1.0
CG C:HIS358 3.3 0.0 1.0
HB2 C:CYS356 3.4 0.0 1.0
HB2 C:CYS378 3.4 0.0 1.0
CB C:CYS356 3.5 0.0 1.0
CB C:CYS378 3.5 0.0 1.0
NE2 C:HIS358 3.6 0.0 1.0
N C:CYS378 3.6 0.0 1.0
HB2 C:HIS358 3.8 0.0 1.0
H C:THR377 3.8 0.0 1.0
CB C:CYS375 3.9 0.0 1.0
HB3 C:CYS356 4.0 0.0 1.0
CD2 C:HIS358 4.0 0.0 1.0
CB C:THR377 4.1 0.0 1.0
HB2 C:CYS375 4.1 0.0 1.0
CA C:CYS378 4.2 0.0 1.0
CB C:HIS358 4.2 0.0 1.0
HE2 C:HIS358 4.3 0.0 1.0
HG22 C:THR377 4.3 0.0 1.0
HB3 C:CYS375 4.3 0.0 1.0
HB3 C:CYS378 4.4 0.0 1.0
HD2 C:PRO376 4.5 0.0 1.0
N C:THR377 4.6 0.0 1.0
C C:THR377 4.6 0.0 1.0
CA C:THR377 4.7 0.0 1.0
H C:GLY357 4.7 0.0 1.0
CG2 C:THR377 4.7 0.0 1.0
C C:CYS356 4.7 0.0 1.0
CA C:CYS356 4.7 0.0 1.0
N C:GLY357 4.7 0.0 1.0
HA C:CYS378 4.8 0.0 1.0
HA C:CYS375 4.8 0.0 1.0
C C:GLY357 4.9 0.0 1.0
CA C:CYS375 4.9 0.0 1.0
O C:GLY357 4.9 0.0 1.0
HB3 C:HIS358 4.9 0.0 1.0
H C:ARG379 4.9 0.0 1.0
HZ C:PHE360 4.9 0.0 1.0
HG23 C:THR377 4.9 0.0 1.0
OG1 C:THR377 5.0 0.0 1.0

Reference:

R.Das, Y.H.Liang, J.Mariano, J.Li, T.Huang, A.King, S.G.Tarasov, A.M.Weissman, X.Ji, R.A.Byrd. Allosteric Regulation of E2:E3 Interactions Promote A Processive Ubiquitination Machine. Embo J. V. 32 2504 2013.
ISSN: ISSN 0261-4189
PubMed: 23942235
DOI: 10.1038/EMBOJ.2013.174
Page generated: Wed Dec 16 03:38:52 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy