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Zinc in PDB 2lq6: Solution Structure of BRD1 PHD2 Finger

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of BRD1 PHD2 Finger (pdb code 2lq6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of BRD1 PHD2 Finger, PDB code: 2lq6:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2lq6

Go back to Zinc Binding Sites List in 2lq6
Zinc binding site 1 out of 2 in the Solution Structure of BRD1 PHD2 Finger


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of BRD1 PHD2 Finger within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
O A:LEU329 2.1 0.0 1.0
SG A:CYS330 2.2 0.0 1.0
SG A:CYS354 2.2 0.0 1.0
ND1 A:HIS351 2.2 0.0 1.0
SG A:CYS327 2.5 0.0 1.0
HB2 A:HIS351 2.9 0.0 1.0
CE1 A:HIS351 3.2 0.0 1.0
CG A:HIS351 3.2 0.0 1.0
HB2 A:CYS330 3.3 0.0 1.0
C A:LEU329 3.3 0.0 1.0
CB A:CYS330 3.4 0.0 1.0
HE1 A:HIS351 3.4 0.0 1.0
CB A:HIS351 3.6 0.0 1.0
H A:HIS351 3.6 0.0 1.0
HB2 A:LEU329 3.6 0.0 1.0
CB A:CYS327 3.9 0.0 1.0
HB3 A:CYS327 3.9 0.0 1.0
CB A:CYS354 3.9 0.0 1.0
HB3 A:LEU329 4.1 0.0 1.0
N A:CYS330 4.1 0.0 1.0
CA A:CYS330 4.2 0.0 1.0
N A:HIS351 4.2 0.0 1.0
CB A:LEU329 4.2 0.0 1.0
HB2 A:CYS327 4.2 0.0 1.0
HB3 A:CYS330 4.2 0.0 1.0
HB2 A:CYS354 4.3 0.0 1.0
CA A:LEU329 4.3 0.0 1.0
HG22 A:THR353 4.3 0.0 1.0
NE2 A:HIS351 4.3 0.0 1.0
HA A:CYS330 4.3 0.0 1.0
HB3 A:CYS354 4.3 0.0 1.0
HB3 A:HIS351 4.4 0.0 1.0
CD2 A:HIS351 4.4 0.0 1.0
CA A:HIS351 4.5 0.0 1.0
HB2 A:PHE350 4.7 0.0 1.0
H A:LEU329 4.7 0.0 1.0
H A:CYS354 4.7 0.0 1.0
HG23 A:THR353 4.8 0.0 1.0
HA A:PHE350 4.8 0.0 1.0
HG12 A:VAL335 4.8 0.0 1.0
N A:LEU329 4.8 0.0 1.0
CG2 A:THR353 4.9 0.0 1.0
CA A:CYS354 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2lq6

Go back to Zinc Binding Sites List in 2lq6
Zinc binding site 2 out of 2 in the Solution Structure of BRD1 PHD2 Finger


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of BRD1 PHD2 Finger within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:0.0
occ:1.00
OG1 A:THR348 1.8 0.0 1.0
SG A:CYS346 2.2 0.0 1.0
SG A:CYS385 2.2 0.0 1.0
ND1 A:HIS388 2.2 0.0 1.0
HG1 A:THR348 2.4 0.0 1.0
SG A:CYS341 2.5 0.0 1.0
CB A:THR348 2.9 0.0 1.0
HB A:THR348 3.0 0.0 1.0
CE1 A:HIS388 3.1 0.0 1.0
HB2 A:HIS388 3.1 0.0 1.0
HE1 A:HIS388 3.2 0.0 1.0
CG A:HIS388 3.3 0.0 1.0
H A:CYS385 3.5 0.0 1.0
H A:THR348 3.6 0.0 1.0
HG21 A:THR348 3.6 0.0 1.0
CB A:HIS388 3.8 0.0 1.0
CB A:CYS346 3.8 0.0 1.0
CB A:CYS385 3.8 0.0 1.0
CG2 A:THR348 3.8 0.0 1.0
CB A:CYS341 3.9 0.0 1.0
HB3 A:CYS346 3.9 0.0 1.0
HB3 A:CYS385 3.9 0.0 1.0
N A:THR348 3.9 0.0 1.0
HB3 A:CYS341 4.0 0.0 1.0
CA A:THR348 4.0 0.0 1.0
HB2 A:CYS341 4.1 0.0 1.0
HG22 A:THR348 4.2 0.0 1.0
NE2 A:HIS388 4.2 0.0 1.0
HB2 A:CYS346 4.3 0.0 1.0
N A:CYS385 4.3 0.0 1.0
CD2 A:HIS388 4.4 0.0 1.0
HB3 A:HIS388 4.4 0.0 1.0
HB2 A:CYS385 4.5 0.0 1.0
HA A:THR348 4.6 0.0 1.0
O A:HIS342 4.7 0.0 1.0
CA A:CYS385 4.7 0.0 1.0
HG23 A:THR348 4.7 0.0 1.0
HA A:HIS388 4.8 0.0 1.0
C A:CYS346 4.8 0.0 1.0
N A:TYR347 4.8 0.0 1.0
HD1 A:TYR384 4.8 0.0 1.0
CA A:CYS346 4.8 0.0 1.0
C A:TYR347 4.9 0.0 1.0
CA A:HIS388 4.9 0.0 1.0
H A:TYR347 4.9 0.0 1.0
HA A:TYR384 5.0 0.0 1.0

Reference:

L.Liu, S.Qin, J.Zhang, P.Ji, Y.Shi, J.Wu. Solution Structure of An Atypical Phd Finger in BRPF2 and Its Interaction with Dna J.Struct.Biol. V. 180 165 2012.
ISSN: ISSN 1047-8477
PubMed: 22820306
DOI: 10.1016/J.JSB.2012.06.014
Page generated: Wed Dec 16 03:38:03 2020

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