Atomistry » Zinc » PDB 2lgk-2m0e » 2ljy
Atomistry »
  Zinc »
    PDB 2lgk-2m0e »
      2ljy »

Zinc in PDB 2ljy: Haddock Model Structure of the N-Terminal Domain Dimer of HPV16 E6

Zinc Binding Sites:

The binding sites of Zinc atom in the Haddock Model Structure of the N-Terminal Domain Dimer of HPV16 E6 (pdb code 2ljy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Haddock Model Structure of the N-Terminal Domain Dimer of HPV16 E6, PDB code: 2ljy:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2ljy

Go back to Zinc Binding Sites List in 2ljy
Zinc binding site 1 out of 2 in the Haddock Model Structure of the N-Terminal Domain Dimer of HPV16 E6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Haddock Model Structure of the N-Terminal Domain Dimer of HPV16 E6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn200

b:15.0
occ:1.00
SG A:CYS30 2.0 15.0 1.0
SG A:CYS63 2.0 15.0 1.0
SG A:CYS66 2.0 15.0 1.0
SG A:CYS33 2.1 15.0 1.0
H A:CYS33 2.7 15.0 1.0
HB2 A:CYS66 3.1 15.0 1.0
HB2 A:CYS30 3.2 15.0 1.0
CB A:CYS30 3.2 15.0 1.0
CB A:CYS66 3.2 15.0 1.0
HB2 A:TYR32 3.2 15.0 1.0
H A:CYS66 3.2 15.0 1.0
H A:CYS63 3.3 15.0 1.0
HZ2 A:LYS65 3.4 15.0 1.0
HB3 A:CYS30 3.5 15.0 1.0
HD3 A:LYS65 3.5 15.0 1.0
CB A:CYS63 3.6 15.0 1.0
HB2 A:LYS65 3.6 15.0 1.0
HB3 A:CYS63 3.6 15.0 1.0
N A:CYS33 3.7 15.0 1.0
CB A:CYS33 3.7 15.0 1.0
H A:TYR32 3.9 15.0 1.0
HB3 A:CYS66 3.9 15.0 1.0
HD2 A:TYR32 4.0 15.0 1.0
N A:CYS66 4.0 15.0 1.0
N A:CYS63 4.1 15.0 1.0
HB3 A:CYS33 4.1 15.0 1.0
CA A:CYS66 4.2 15.0 1.0
HB2 A:CYS63 4.3 15.0 1.0
CB A:TYR32 4.3 15.0 1.0
CA A:CYS33 4.3 15.0 1.0
H A:LYS34 4.4 15.0 1.0
NZ A:LYS65 4.4 15.0 1.0
CA A:CYS63 4.4 15.0 1.0
H A:GLN35 4.4 15.0 1.0
HB2 A:CYS33 4.4 15.0 1.0
HB2 A:GLN35 4.5 15.0 1.0
CA A:CYS30 4.5 15.0 1.0
CD A:LYS65 4.6 15.0 1.0
N A:TYR32 4.6 15.0 1.0
CB A:LYS65 4.7 15.0 1.0
C A:TYR32 4.7 15.0 1.0
HA A:CYS30 4.7 15.0 1.0
HA A:VAL62 4.7 15.0 1.0
CA A:TYR32 4.7 15.0 1.0
HA A:CYS66 4.8 15.0 1.0
HB3 A:TYR32 4.8 15.0 1.0
H A:LYS65 4.8 15.0 1.0
HZ1 A:LYS65 4.8 15.0 1.0
CD2 A:TYR32 4.9 15.0 1.0
H A:VAL31 4.9 15.0 1.0
HZ3 A:LYS65 4.9 15.0 1.0
N A:LYS34 5.0 15.0 1.0

Zinc binding site 2 out of 2 in 2ljy

Go back to Zinc Binding Sites List in 2ljy
Zinc binding site 2 out of 2 in the Haddock Model Structure of the N-Terminal Domain Dimer of HPV16 E6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Haddock Model Structure of the N-Terminal Domain Dimer of HPV16 E6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn200

b:15.0
occ:1.00
SG B:CYS66 2.0 15.0 1.0
SG B:CYS30 2.1 15.0 1.0
SG B:CYS63 2.1 15.0 1.0
SG B:CYS33 2.1 15.0 1.0
H B:CYS33 2.8 15.0 1.0
H B:CYS63 3.1 15.0 1.0
HB2 B:TYR32 3.3 15.0 1.0
HB2 B:CYS30 3.3 15.0 1.0
CB B:CYS30 3.3 15.0 1.0
HB2 B:CYS33 3.4 15.0 1.0
CB B:CYS33 3.4 15.0 1.0
H B:CYS66 3.4 15.0 1.0
HB2 B:LYS65 3.5 15.0 1.0
HB3 B:CYS30 3.7 15.0 1.0
N B:CYS33 3.7 15.0 1.0
HE2 B:LYS65 3.7 15.0 1.0
CB B:CYS66 3.8 15.0 1.0
HZ1 B:LYS65 3.8 15.0 1.0
CB B:CYS63 3.8 15.0 1.0
N B:CYS63 4.0 15.0 1.0
H B:TYR32 4.0 15.0 1.0
HB2 B:CYS66 4.1 15.0 1.0
CA B:CYS33 4.2 15.0 1.0
N B:CYS66 4.2 15.0 1.0
HB3 B:CYS33 4.2 15.0 1.0
HB3 B:CYS63 4.3 15.0 1.0
CB B:TYR32 4.3 15.0 1.0
HA B:VAL62 4.3 15.0 1.0
HD2 B:TYR32 4.3 15.0 1.0
HB3 B:CYS66 4.3 15.0 1.0
HB2 B:CYS63 4.4 15.0 1.0
CA B:CYS63 4.4 15.0 1.0
CE B:LYS65 4.6 15.0 1.0
NZ B:LYS65 4.6 15.0 1.0
CB B:LYS65 4.6 15.0 1.0
HB3 B:TYR32 4.6 15.0 1.0
HD12 B:LEU37 4.6 15.0 1.0
CA B:CYS30 4.6 15.0 1.0
CA B:CYS66 4.7 15.0 1.0
HA B:CYS30 4.7 15.0 1.0
C B:TYR32 4.7 15.0 1.0
HG2 B:GLN35 4.7 15.0 1.0
N B:TYR32 4.8 15.0 1.0
HA B:CYS33 4.8 15.0 1.0
HG12 B:VAL62 4.8 15.0 1.0
HB3 B:LYS65 4.8 15.0 1.0
CA B:TYR32 4.8 15.0 1.0
O B:CYS63 4.8 15.0 1.0
H B:LYS34 4.9 15.0 1.0
HD3 B:LYS65 4.9 15.0 1.0
HZ3 B:LYS65 4.9 15.0 1.0
H B:LYS65 4.9 15.0 1.0
C B:CYS63 4.9 15.0 1.0
HG13 B:VAL62 5.0 15.0 1.0

Reference:

K.Zanier, A.Ould M'hamed Ould Sidi, C.Boulade-Ladame, V.Rybin, A.Chappelle, A.Atkinson, B.Kieffer, G.Trave. Solution Structure Analysis of the HPV16 E6 Oncoprotein Reveals A Self-Association Mechanism Required For E6-Mediated Degradation of P53. Structure V. 20 604 2012.
ISSN: ISSN 0969-2126
PubMed: 22483108
DOI: 10.1016/J.STR.2012.02.001
Page generated: Wed Dec 16 03:37:47 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy