Zinc in PDB 2ljy: Haddock Model Structure of the N-Terminal Domain Dimer of HPV16 E6

The binding sites of Zinc atom in the Haddock Model Structure of the N-Terminal Domain Dimer of HPV16 E6 (pdb code 2ljy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Haddock Model Structure of the N-Terminal Domain Dimer of HPV16 E6, PDB code: 2ljy:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Haddock Model Structure of the N-Terminal Domain Dimer of HPV16 E6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Haddock Model Structure of the N-Terminal Domain Dimer of HPV16 E6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn200 b:15.0 occ:1.00 SG A:CYS30 2.0 15.0 1.0 SG A:CYS63 2.0 15.0 1.0 SG A:CYS66 2.0 15.0 1.0 SG A:CYS33 2.1 15.0 1.0 H A:CYS33 2.7 15.0 1.0 HB2 A:CYS66 3.1 15.0 1.0 HB2 A:CYS30 3.2 15.0 1.0 CB A:CYS30 3.2 15.0 1.0 CB A:CYS66 3.2 15.0 1.0 HB2 A:TYR32 3.2 15.0 1.0 H A:CYS66 3.2 15.0 1.0 H A:CYS63 3.3 15.0 1.0 HZ2 A:LYS65 3.4 15.0 1.0 HB3 A:CYS30 3.5 15.0 1.0 HD3 A:LYS65 3.5 15.0 1.0 CB A:CYS63 3.6 15.0 1.0 HB2 A:LYS65 3.6 15.0 1.0 HB3 A:CYS63 3.6 15.0 1.0 N A:CYS33 3.7 15.0 1.0 CB A:CYS33 3.7 15.0 1.0 H A:TYR32 3.9 15.0 1.0 HB3 A:CYS66 3.9 15.0 1.0 HD2 A:TYR32 4.0 15.0 1.0 N A:CYS66 4.0 15.0 1.0 N A:CYS63 4.1 15.0 1.0 HB3 A:CYS33 4.1 15.0 1.0 CA A:CYS66 4.2 15.0 1.0 HB2 A:CYS63 4.3 15.0 1.0 CB A:TYR32 4.3 15.0 1.0 CA A:CYS33 4.3 15.0 1.0 H A:LYS34 4.4 15.0 1.0 NZ A:LYS65 4.4 15.0 1.0 CA A:CYS63 4.4 15.0 1.0 H A:GLN35 4.4 15.0 1.0 HB2 A:CYS33 4.4 15.0 1.0 HB2 A:GLN35 4.5 15.0 1.0 CA A:CYS30 4.5 15.0 1.0 CD A:LYS65 4.6 15.0 1.0 N A:TYR32 4.6 15.0 1.0 CB A:LYS65 4.7 15.0 1.0 C A:TYR32 4.7 15.0 1.0 HA A:CYS30 4.7 15.0 1.0 HA A:VAL62 4.7 15.0 1.0 CA A:TYR32 4.7 15.0 1.0 HA A:CYS66 4.8 15.0 1.0 HB3 A:TYR32 4.8 15.0 1.0 H A:LYS65 4.8 15.0 1.0 HZ1 A:LYS65 4.8 15.0 1.0 CD2 A:TYR32 4.9 15.0 1.0 H A:VAL31 4.9 15.0 1.0 HZ3 A:LYS65 4.9 15.0 1.0 N A:LYS34 5.0 15.0 1.0

Zinc binding site 2 out of 2 in the Haddock Model Structure of the N-Terminal Domain Dimer of HPV16 E6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Haddock Model Structure of the N-Terminal Domain Dimer of HPV16 E6 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn200 b:15.0 occ:1.00 SG B:CYS66 2.0 15.0 1.0 SG B:CYS30 2.1 15.0 1.0 SG B:CYS63 2.1 15.0 1.0 SG B:CYS33 2.1 15.0 1.0 H B:CYS33 2.8 15.0 1.0 H B:CYS63 3.1 15.0 1.0 HB2 B:TYR32 3.3 15.0 1.0 HB2 B:CYS30 3.3 15.0 1.0 CB B:CYS30 3.3 15.0 1.0 HB2 B:CYS33 3.4 15.0 1.0 CB B:CYS33 3.4 15.0 1.0 H B:CYS66 3.4 15.0 1.0 HB2 B:LYS65 3.5 15.0 1.0 HB3 B:CYS30 3.7 15.0 1.0 N B:CYS33 3.7 15.0 1.0 HE2 B:LYS65 3.7 15.0 1.0 CB B:CYS66 3.8 15.0 1.0 HZ1 B:LYS65 3.8 15.0 1.0 CB B:CYS63 3.8 15.0 1.0 N B:CYS63 4.0 15.0 1.0 H B:TYR32 4.0 15.0 1.0 HB2 B:CYS66 4.1 15.0 1.0 CA B:CYS33 4.2 15.0 1.0 N B:CYS66 4.2 15.0 1.0 HB3 B:CYS33 4.2 15.0 1.0 HB3 B:CYS63 4.3 15.0 1.0 CB B:TYR32 4.3 15.0 1.0 HA B:VAL62 4.3 15.0 1.0 HD2 B:TYR32 4.3 15.0 1.0 HB3 B:CYS66 4.3 15.0 1.0 HB2 B:CYS63 4.4 15.0 1.0 CA B:CYS63 4.4 15.0 1.0 CE B:LYS65 4.6 15.0 1.0 NZ B:LYS65 4.6 15.0 1.0 CB B:LYS65 4.6 15.0 1.0 HB3 B:TYR32 4.6 15.0 1.0 HD12 B:LEU37 4.6 15.0 1.0 CA B:CYS30 4.6 15.0 1.0 CA B:CYS66 4.7 15.0 1.0 HA B:CYS30 4.7 15.0 1.0 C B:TYR32 4.7 15.0 1.0 HG2 B:GLN35 4.7 15.0 1.0 N B:TYR32 4.8 15.0 1.0 HA B:CYS33 4.8 15.0 1.0 HG12 B:VAL62 4.8 15.0 1.0 HB3 B:LYS65 4.8 15.0 1.0 CA B:TYR32 4.8 15.0 1.0 O B:CYS63 4.8 15.0 1.0 H B:LYS34 4.9 15.0 1.0 HD3 B:LYS65 4.9 15.0 1.0 HZ3 B:LYS65 4.9 15.0 1.0 H B:LYS65 4.9 15.0 1.0 C B:CYS63 4.9 15.0 1.0 HG13 B:VAL62 5.0 15.0 1.0

K.Zanier, A.Ould M'hamed Ould Sidi, C.Boulade-Ladame, V.Rybin, A.Chappelle, A.Atkinson, B.Kieffer, G.Trave. Solution Structure Analysis of the HPV16 E6 Oncoprotein Reveals A Self-Association Mechanism Required For E6-Mediated Degradation of P53. Structure V. 20 604 2012.
ISSN: ISSN 0969-2126
PubMed: 22483108
DOI: 10.1016/J.STR.2012.02.001