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Zinc in PDB 2lhn: Rna-Binding Zinc Finger Protein

Zinc Binding Sites:

The binding sites of Zinc atom in the Rna-Binding Zinc Finger Protein (pdb code 2lhn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Rna-Binding Zinc Finger Protein, PDB code: 2lhn:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2lhn

Go back to Zinc Binding Sites List in 2lhn
Zinc binding site 1 out of 3 in the Rna-Binding Zinc Finger Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Rna-Binding Zinc Finger Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:20.0
occ:1.00
NE2 A:HIS430 2.0 20.0 1.0
SG A:CYS415 2.3 20.0 1.0
SG A:CYS426 2.3 20.0 1.0
SG A:CYS421 2.3 20.0 1.0
CD2 A:HIS430 3.0 20.0 1.0
CE1 A:HIS430 3.0 20.0 1.0
HB3 A:CYS426 3.2 20.0 1.0
HD2 A:HIS430 3.2 20.0 1.0
HE1 A:HIS430 3.3 20.0 1.0
HB2 A:CYS415 3.3 20.0 1.0
CB A:CYS426 3.4 20.0 1.0
CB A:CYS415 3.4 20.0 1.0
CB A:CYS421 3.5 20.0 1.0
HB2 A:CYS421 3.6 20.0 1.0
HB3 A:CYS415 3.7 20.0 1.0
HB3 A:CYS421 3.7 20.0 1.0
HB2 A:CYS426 3.8 20.0 1.0
ND1 A:HIS430 4.1 20.0 1.0
CG A:HIS430 4.1 20.0 1.0
HB2 A:TYR428 4.4 20.0 1.0
HD1 A:TYR428 4.5 20.0 1.0
HB3 A:ASN423 4.5 20.0 1.0
H A:TYR428 4.6 20.0 1.0
CA A:CYS426 4.6 20.0 1.0
CA A:CYS415 4.7 20.0 1.0
HA A:CYS415 4.7 20.0 1.0
H A:ASN423 4.7 20.0 1.0
CA A:CYS421 4.8 20.0 1.0
HA A:CYS421 4.8 20.0 1.0
O A:ASN423 4.9 20.0 1.0
C A:CYS426 5.0 20.0 1.0
HH21 A:ARG432 5.0 20.0 1.0

Zinc binding site 2 out of 3 in 2lhn

Go back to Zinc Binding Sites List in 2lhn
Zinc binding site 2 out of 3 in the Rna-Binding Zinc Finger Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Rna-Binding Zinc Finger Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn502

b:20.0
occ:1.00
NE2 A:HIS452 2.0 20.0 1.0
SG A:CYS443 2.3 20.0 1.0
SG A:CYS448 2.3 20.0 1.0
SG A:CYS437 2.3 20.0 1.0
CD2 A:HIS452 3.0 20.0 1.0
CE1 A:HIS452 3.0 20.0 1.0
HB3 A:ARG445 3.2 20.0 1.0
HD2 A:HIS452 3.2 20.0 1.0
CB A:CYS448 3.3 20.0 1.0
HB3 A:CYS448 3.3 20.0 1.0
HB2 A:CYS437 3.4 20.0 1.0
HE1 A:HIS452 3.4 20.0 1.0
HB2 A:CYS448 3.4 20.0 1.0
CB A:CYS443 3.4 20.0 1.0
HB2 A:CYS443 3.4 20.0 1.0
CB A:CYS437 3.4 20.0 1.0
HB3 A:CYS443 3.6 20.0 1.0
HD2 A:PHE450 3.8 20.0 1.0
HH12 A:ARG429 3.8 20.0 1.0
HB3 A:CYS437 3.8 20.0 1.0
HB2 A:PHE450 3.8 20.0 1.0
HH11 A:ARG429 4.1 20.0 1.0
ND1 A:HIS452 4.1 20.0 1.0
CG A:HIS452 4.2 20.0 1.0
NH1 A:ARG429 4.2 20.0 1.0
HD3 A:ARG445 4.2 20.0 1.0
HH11 A:ARG445 4.2 20.0 1.0
CB A:ARG445 4.2 20.0 1.0
H A:ARG445 4.3 20.0 1.0
HB2 A:ARG445 4.4 20.0 1.0
HB2 A:GLU439 4.5 20.0 1.0
CD2 A:PHE450 4.6 20.0 1.0
O A:ARG445 4.7 20.0 1.0
HA A:CYS437 4.7 20.0 1.0
H A:GLU439 4.7 20.0 1.0
CA A:CYS437 4.7 20.0 1.0
CA A:CYS448 4.8 20.0 1.0
CA A:CYS443 4.8 20.0 1.0
CB A:PHE450 4.8 20.0 1.0
HA A:CYS448 4.9 20.0 1.0
HA A:CYS443 4.9 20.0 1.0
O A:GLY440 5.0 20.0 1.0

Zinc binding site 3 out of 3 in 2lhn

Go back to Zinc Binding Sites List in 2lhn
Zinc binding site 3 out of 3 in the Rna-Binding Zinc Finger Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Rna-Binding Zinc Finger Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn503

b:20.0
occ:1.00
NE2 A:HIS473 2.0 20.0 1.0
SG A:CYS469 2.3 20.0 1.0
SG A:CYS458 2.3 20.0 1.0
SG A:CYS464 2.3 20.0 1.0
CE1 A:HIS473 3.0 20.0 1.0
CD2 A:HIS473 3.0 20.0 1.0
HD2 A:HIS473 3.3 20.0 1.0
HE1 A:HIS473 3.3 20.0 1.0
HB2 A:CYS458 3.4 20.0 1.0
HB3 A:CYS469 3.4 20.0 1.0
CB A:CYS469 3.4 20.0 1.0
CB A:CYS464 3.4 20.0 1.0
CB A:CYS458 3.5 20.0 1.0
HB2 A:CYS464 3.5 20.0 1.0
HB3 A:CYS464 3.6 20.0 1.0
HB2 A:CYS469 3.7 20.0 1.0
HB3 A:CYS458 3.9 20.0 1.0
ND1 A:HIS473 4.1 20.0 1.0
HB3 A:ASN466 4.1 20.0 1.0
CG A:HIS473 4.2 20.0 1.0
HB2 A:PHE460 4.2 20.0 1.0
HB2 A:PHE471 4.3 20.0 1.0
H A:PHE471 4.5 20.0 1.0
H A:GLY461 4.6 20.0 1.0
H A:PHE460 4.6 20.0 1.0
O A:PHE471 4.6 20.0 1.0
CA A:CYS458 4.8 20.0 1.0
HA A:CYS458 4.8 20.0 1.0
CA A:CYS469 4.8 20.0 1.0
CA A:CYS464 4.8 20.0 1.0
H A:ASN466 4.9 20.0 1.0

Reference:

C.Brockmann, S.Soucek, S.I.Kuhlmann, K.Mills-Lujan, S.M.Kelly, J.C.Yang, N.Iglesias, F.Stutz, A.H.Corbett, D.Neuhaus, M.Stewart. Structural Basis For Polyadenosine-Rna Binding By NAB2 Zn Fingers and Its Function in Mrna Nuclear Export. Structure V. 20 1007 2012.
ISSN: ISSN 0969-2126
PubMed: 22560733
DOI: 10.1016/J.STR.2012.03.011
Page generated: Wed Dec 16 03:37:37 2020

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