Zinc in PDB 2lgv: RBX1
Zinc Binding Sites:
The binding sites of Zinc atom in the RBX1
(pdb code 2lgv). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the
RBX1, PDB code: 2lgv:
Jump to Zinc binding site number:
1;
2;
3;
Zinc binding site 1 out
of 3 in 2lgv
Go back to
Zinc Binding Sites List in 2lgv
Zinc binding site 1 out
of 3 in the RBX1
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of RBX1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn109
b:34.1
occ:1.00
|
SG
|
A:CYS83
|
2.1
|
71.2
|
1.0
|
|
ND1
|
A:HIS80
|
2.1
|
32.3
|
1.0
|
|
SG
|
A:CYS45
|
2.1
|
23.1
|
1.0
|
|
SG
|
A:CYS42
|
2.3
|
22.0
|
1.0
|
|
HB2
|
A:HIS80
|
2.4
|
42.2
|
1.0
|
|
HB3
|
A:CYS42
|
2.8
|
34.5
|
1.0
|
|
CG
|
A:HIS80
|
2.9
|
75.2
|
1.0
|
|
CB
|
A:CYS42
|
3.0
|
11.1
|
1.0
|
|
HB3
|
A:CYS45
|
3.1
|
45.5
|
1.0
|
|
CB
|
A:HIS80
|
3.1
|
32.5
|
1.0
|
|
HB2
|
A:CYS83
|
3.2
|
43.4
|
1.0
|
|
HB2
|
A:CYS42
|
3.2
|
0.5
|
1.0
|
|
CE1
|
A:HIS80
|
3.2
|
2.1
|
1.0
|
|
CB
|
A:CYS83
|
3.2
|
62.4
|
1.0
|
|
CB
|
A:CYS45
|
3.3
|
73.0
|
1.0
|
|
H
|
A:CYS45
|
3.3
|
35.1
|
1.0
|
|
HB3
|
A:CYS53
|
3.6
|
25.4
|
1.0
|
|
HE1
|
A:HIS80
|
3.6
|
2.3
|
1.0
|
|
H
|
A:HIS80
|
3.6
|
12.3
|
1.0
|
|
HB3
|
A:CYS83
|
3.6
|
41.2
|
1.0
|
|
HB3
|
A:HIS80
|
3.6
|
63.4
|
1.0
|
|
HA
|
A:CYS53
|
3.7
|
21.2
|
1.0
|
|
HB
|
A:ILE44
|
3.8
|
35.2
|
1.0
|
|
HB2
|
A:ASN47
|
3.9
|
44.1
|
1.0
|
|
N
|
A:CYS45
|
4.0
|
70.1
|
1.0
|
|
HB2
|
A:CYS45
|
4.0
|
42.4
|
1.0
|
|
SG
|
A:CYS53
|
4.0
|
31.2
|
1.0
|
|
CD2
|
A:HIS80
|
4.1
|
65.4
|
1.0
|
|
CB
|
A:CYS53
|
4.2
|
54.2
|
1.0
|
|
H
|
A:CYS83
|
4.2
|
61.3
|
1.0
|
|
NE2
|
A:HIS80
|
4.2
|
64.4
|
1.0
|
|
CA
|
A:CYS45
|
4.2
|
30.1
|
1.0
|
|
N
|
A:HIS80
|
4.3
|
61.2
|
1.0
|
|
CA
|
A:HIS80
|
4.3
|
72.4
|
1.0
|
|
CA
|
A:CYS42
|
4.4
|
2.4
|
1.0
|
|
H
|
A:ASN47
|
4.5
|
24.3
|
1.0
|
|
CA
|
A:CYS53
|
4.5
|
63.1
|
1.0
|
|
H
|
A:ARG46
|
4.5
|
73.0
|
1.0
|
|
H
|
A:ILE54
|
4.6
|
51.4
|
1.0
|
|
CA
|
A:CYS83
|
4.6
|
22.1
|
1.0
|
|
HD21
|
A:ASN47
|
4.6
|
23.1
|
1.0
|
|
O
|
A:CYS42
|
4.7
|
42.2
|
1.0
|
|
N
|
A:CYS83
|
4.7
|
54.5
|
1.0
|
|
H
|
A:ILE44
|
4.8
|
42.5
|
1.0
|
|
C
|
A:CYS42
|
4.8
|
44.2
|
1.0
|
|
CB
|
A:ILE44
|
4.8
|
35.2
|
1.0
|
|
HA
|
A:CYS42
|
4.9
|
10.2
|
1.0
|
|
HA
|
A:CYS83
|
5.0
|
23.1
|
1.0
|
|
C
|
A:ILE44
|
5.0
|
12.2
|
1.0
|
|
HA
|
A:HIS80
|
5.0
|
61.5
|
1.0
|
|
CB
|
A:ASN47
|
5.0
|
12.3
|
1.0
|
|
Zinc binding site 2 out
of 3 in 2lgv
Go back to
Zinc Binding Sites List in 2lgv
Zinc binding site 2 out
of 3 in the RBX1
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of RBX1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn110
b:74.2
occ:1.00
|
SG
|
A:CYS56
|
2.2
|
65.3
|
1.0
|
|
ND1
|
A:HIS82
|
2.2
|
21.3
|
1.0
|
|
SG
|
A:CYS68
|
2.3
|
70.3
|
1.0
|
|
SG
|
A:CYS53
|
2.5
|
31.2
|
1.0
|
|
HB2
|
A:CYS53
|
2.8
|
10.3
|
1.0
|
|
CE1
|
A:HIS82
|
3.1
|
2.4
|
1.0
|
|
CG
|
A:HIS82
|
3.2
|
12.3
|
1.0
|
|
CB
|
A:CYS53
|
3.2
|
54.2
|
1.0
|
|
HE1
|
A:HIS82
|
3.3
|
25.4
|
1.0
|
|
HB3
|
A:HIS82
|
3.3
|
65.1
|
1.0
|
|
HB2
|
A:HIS82
|
3.5
|
31.4
|
1.0
|
|
CB
|
A:CYS56
|
3.5
|
44.5
|
1.0
|
|
CB
|
A:HIS82
|
3.6
|
60.3
|
1.0
|
|
HB3
|
A:CYS56
|
3.6
|
71.2
|
1.0
|
|
HG1
|
A:THR69
|
3.7
|
42.5
|
1.0
|
|
HB2
|
A:CYS56
|
3.7
|
41.3
|
1.0
|
|
H
|
A:CYS53
|
3.7
|
10.3
|
1.0
|
|
CB
|
A:CYS68
|
3.7
|
50.1
|
1.0
|
|
HB3
|
A:CYS68
|
3.8
|
50.4
|
1.0
|
|
HB3
|
A:CYS53
|
3.9
|
25.4
|
1.0
|
|
HB2
|
A:CYS68
|
4.0
|
43.3
|
1.0
|
|
NE2
|
A:HIS82
|
4.1
|
22.1
|
1.0
|
|
OG1
|
A:THR69
|
4.1
|
20.4
|
1.0
|
|
CD2
|
A:HIS82
|
4.2
|
30.0
|
1.0
|
|
N
|
A:CYS53
|
4.4
|
61.3
|
1.0
|
|
CA
|
A:CYS53
|
4.4
|
63.1
|
1.0
|
|
HE2
|
A:HIS82
|
4.7
|
0.0
|
1.0
|
|
H
|
A:CYS56
|
4.7
|
64.2
|
1.0
|
|
CA
|
A:CYS56
|
4.8
|
55.5
|
1.0
|
|
HA
|
A:CYS56
|
5.0
|
44.0
|
1.0
|
|
Zinc binding site 3 out
of 3 in 2lgv
Go back to
Zinc Binding Sites List in 2lgv
Zinc binding site 3 out
of 3 in the RBX1
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of RBX1 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn111
b:43.3
occ:1.00
|
OD2
|
A:ASP97
|
1.9
|
70.2
|
1.0
|
|
SG
|
A:CYS75
|
2.2
|
72.1
|
1.0
|
|
SG
|
A:CYS94
|
2.2
|
71.5
|
1.0
|
|
ND1
|
A:HIS77
|
2.3
|
31.3
|
1.0
|
|
HB2
|
A:CYS75
|
2.3
|
60.4
|
1.0
|
|
CB
|
A:CYS75
|
2.7
|
64.0
|
1.0
|
|
HB2
|
A:ASP97
|
2.9
|
5.4
|
1.0
|
|
CE1
|
A:HIS77
|
2.9
|
51.3
|
1.0
|
|
CG
|
A:ASP97
|
2.9
|
72.2
|
1.0
|
|
HE1
|
A:HIS77
|
3.0
|
32.5
|
1.0
|
|
HB3
|
A:CYS75
|
3.2
|
41.5
|
1.0
|
|
CG
|
A:HIS77
|
3.4
|
33.2
|
1.0
|
|
CB
|
A:ASP97
|
3.4
|
45.1
|
1.0
|
|
HB2
|
A:HIS77
|
3.4
|
75.2
|
1.0
|
|
CB
|
A:CYS94
|
3.5
|
54.4
|
1.0
|
|
HB3
|
A:CYS94
|
3.5
|
23.3
|
1.0
|
|
HE3
|
A:TRP101
|
3.6
|
15.4
|
1.0
|
|
HB2
|
A:CYS94
|
3.8
|
43.3
|
1.0
|
|
O
|
A:CYS75
|
3.9
|
14.3
|
1.0
|
|
OD1
|
A:ASP97
|
3.9
|
21.1
|
1.0
|
|
HB3
|
A:ASP97
|
3.9
|
4.1
|
1.0
|
|
NE2
|
A:HIS77
|
4.0
|
51.1
|
1.0
|
|
CB
|
A:HIS77
|
4.0
|
64.1
|
1.0
|
|
CA
|
A:CYS75
|
4.0
|
21.3
|
1.0
|
|
HB2
|
A:ARG99
|
4.1
|
74.3
|
1.0
|
|
CD2
|
A:HIS77
|
4.2
|
15.0
|
1.0
|
|
C
|
A:CYS75
|
4.2
|
65.2
|
1.0
|
|
H
|
A:ASP97
|
4.2
|
72.4
|
1.0
|
|
HA
|
A:TRP101
|
4.3
|
65.1
|
1.0
|
|
HE2
|
A:PHE79
|
4.4
|
23.2
|
1.0
|
|
HZ3
|
A:TRP101
|
4.4
|
24.2
|
1.0
|
|
H
|
A:CYS75
|
4.4
|
43.2
|
1.0
|
|
CE3
|
A:TRP101
|
4.4
|
62.3
|
1.0
|
|
HE2
|
A:HIS77
|
4.6
|
0.0
|
1.0
|
|
HB3
|
A:HIS77
|
4.6
|
43.5
|
1.0
|
|
HA
|
A:CYS75
|
4.7
|
24.0
|
1.0
|
|
CA
|
A:ASP97
|
4.7
|
74.5
|
1.0
|
|
N
|
A:CYS75
|
4.7
|
63.2
|
1.0
|
|
CA
|
A:CYS94
|
4.8
|
31.4
|
1.0
|
|
CZ3
|
A:TRP101
|
4.8
|
51.2
|
1.0
|
|
N
|
A:ASP97
|
4.9
|
62.0
|
1.0
|
|
HA
|
A:CYS94
|
4.9
|
33.4
|
1.0
|
|
H
|
A:CYS94
|
4.9
|
55.1
|
1.0
|
|
Reference:
D.E.Spratt,
K.Wu,
J.Kovacev,
Z.Q.Pan,
G.S.Shaw.
Selective Recruitment of An E2~Ubiquitin Complex By An E3 Ubiquitin Ligase. J.Biol.Chem. V. 287 17374 2012.
ISSN: ISSN 0021-9258
PubMed: 22433864
DOI: 10.1074/JBC.M112.353748
Page generated: Thu Oct 17 01:50:35 2024
|
