Atomistry » Zinc » PDB 2lgk-2m0e » 2lgk
Atomistry »
  Zinc »
    PDB 2lgk-2m0e »
      2lgk »

Zinc in PDB 2lgk: uc(Nmr) Structure of UHRF1 Phd Domains in A Complex with Histone H3 Peptide

Zinc Binding Sites:

The binding sites of Zinc atom in the uc(Nmr) Structure of UHRF1 Phd Domains in A Complex with Histone H3 Peptide (pdb code 2lgk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the uc(Nmr) Structure of UHRF1 Phd Domains in A Complex with Histone H3 Peptide, PDB code: 2lgk:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2lgk

Go back to Zinc Binding Sites List in 2lgk
Zinc binding site 1 out of 3 in the uc(Nmr) Structure of UHRF1 Phd Domains in A Complex with Histone H3 Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Structure of UHRF1 Phd Domains in A Complex with Histone H3 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn380

b:0.0
occ:1.00
SG A:CYS329 2.3 0.0 1.0
SG A:CYS315 2.3 0.0 1.0
SG A:CYS318 2.3 0.0 1.0
SG A:CYS326 2.3 0.0 1.0
H A:CYS329 2.9 0.0 1.0
HB A:VAL328 3.0 0.0 1.0
HB3 A:CYS326 3.1 0.0 1.0
HB3 A:CYS318 3.2 0.0 1.0
HB3 A:CYS329 3.2 0.0 1.0
CB A:CYS315 3.3 0.0 1.0
CB A:CYS326 3.3 0.0 1.0
CB A:CYS329 3.3 0.0 1.0
HB3 A:CYS315 3.4 0.0 1.0
CB A:CYS318 3.4 0.0 1.0
N A:CYS329 3.4 0.0 1.0
HB2 A:CYS315 3.4 0.0 1.0
HB2 A:CYS326 3.9 0.0 1.0
CA A:CYS329 4.0 0.0 1.0
HB2 A:CYS318 4.0 0.0 1.0
CB A:VAL328 4.0 0.0 1.0
HG12 A:VAL328 4.2 0.0 1.0
H A:CYS318 4.2 0.0 1.0
HB2 A:CYS329 4.2 0.0 1.0
C A:VAL328 4.3 0.0 1.0
H A:VAL328 4.4 0.0 1.0
O A:CYS326 4.4 0.0 1.0
CA A:CYS326 4.5 0.0 1.0
CA A:CYS318 4.5 0.0 1.0
CA A:VAL328 4.6 0.0 1.0
CG1 A:VAL328 4.6 0.0 1.0
C A:CYS326 4.6 0.0 1.0
O A:CYS329 4.6 0.0 1.0
N A:VAL328 4.6 0.0 1.0
H A:CYS326 4.7 0.0 1.0
C A:CYS329 4.7 0.0 1.0
CA A:CYS315 4.7 0.0 1.0
N A:CYS318 4.7 0.0 1.0
HG13 A:VAL328 4.8 0.0 1.0
C A:CYS318 4.8 0.0 1.0
HA A:CYS315 4.8 0.0 1.0
HA A:VAL322 4.8 0.0 1.0
O A:CYS318 4.9 0.0 1.0
HA A:CYS329 4.9 0.0 1.0
N A:CYS326 4.9 0.0 1.0
HG23 A:VAL328 5.0 0.0 1.0

Zinc binding site 2 out of 3 in 2lgk

Go back to Zinc Binding Sites List in 2lgk
Zinc binding site 2 out of 3 in the uc(Nmr) Structure of UHRF1 Phd Domains in A Complex with Histone H3 Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Structure of UHRF1 Phd Domains in A Complex with Histone H3 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn381

b:0.0
occ:1.00
NE2 A:HIS354 2.0 0.0 1.0
SG A:CYS334 2.3 0.0 1.0
SG A:CYS331 2.3 0.0 1.0
SG A:CYS357 2.3 0.0 1.0
CD2 A:HIS354 2.3 0.0 1.0
HD2 A:HIS354 2.5 0.0 1.0
H A:CYS334 2.7 0.0 1.0
CE1 A:HIS354 3.0 0.0 1.0
HB3 A:CYS334 3.3 0.0 1.0
CB A:CYS331 3.3 0.0 1.0
H A:GLY335 3.4 0.0 1.0
CB A:CYS334 3.4 0.0 1.0
CG A:HIS354 3.4 0.0 1.0
HB3 A:CYS331 3.4 0.0 1.0
CB A:CYS357 3.4 0.0 1.0
HB3 A:CYS357 3.5 0.0 1.0
HB2 A:CYS331 3.5 0.0 1.0
HB2 A:LEU333 3.5 0.0 1.0
N A:CYS334 3.5 0.0 1.0
HE1 A:HIS354 3.6 0.0 1.0
HA A:HIS354 3.6 0.0 1.0
HB2 A:CYS357 3.7 0.0 1.0
ND1 A:HIS354 3.7 0.0 1.0
H A:GLY336 4.0 0.0 1.0
CA A:CYS334 4.0 0.0 1.0
OH A:TYR356 4.1 0.0 1.0
H A:LEU333 4.2 0.0 1.0
N A:GLY335 4.2 0.0 1.0
HE1 A:TYR356 4.2 0.0 1.0
HB2 A:CYS334 4.3 0.0 1.0
CZ A:TYR356 4.5 0.0 1.0
CA A:HIS354 4.5 0.0 1.0
CE1 A:TYR356 4.5 0.0 1.0
HD1 A:HIS354 4.6 0.0 1.0
CB A:LEU333 4.6 0.0 1.0
CB A:HIS354 4.6 0.0 1.0
C A:CYS334 4.6 0.0 1.0
C A:LEU333 4.6 0.0 1.0
CA A:CYS331 4.7 0.0 1.0
HH A:TYR356 4.7 0.0 1.0
N A:LEU333 4.8 0.0 1.0
CA A:CYS357 4.8 0.0 1.0
HE21 A:GLN338 4.8 0.0 1.0
N A:GLY336 4.9 0.0 1.0
CA A:LEU333 4.9 0.0 1.0
HA A:CYS334 4.9 0.0 1.0
HA A:CYS357 5.0 0.0 1.0
H A:CYS357 5.0 0.0 1.0

Zinc binding site 3 out of 3 in 2lgk

Go back to Zinc Binding Sites List in 2lgk
Zinc binding site 3 out of 3 in the uc(Nmr) Structure of UHRF1 Phd Domains in A Complex with Histone H3 Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of uc(Nmr) Structure of UHRF1 Phd Domains in A Complex with Histone H3 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn382

b:0.0
occ:1.00
SG A:CYS376 2.3 0.0 1.0
SG A:CYS349 2.3 0.0 1.0
SG A:CYS373 2.3 0.0 1.0
SG A:CYS346 2.3 0.0 1.0
H A:CYS373 2.9 0.0 1.0
HB2 A:GLU348 3.2 0.0 1.0
H A:CYS349 3.3 0.0 1.0
HB2 A:CYS376 3.3 0.0 1.0
HB2 A:CYS349 3.3 0.0 1.0
HB3 A:CYS373 3.4 0.0 1.0
CB A:CYS376 3.4 0.0 1.0
CB A:CYS349 3.5 0.0 1.0
CB A:CYS373 3.5 0.0 1.0
CB A:CYS346 3.5 0.0 1.0
H A:CYS376 3.6 0.0 1.0
HB3 A:CYS346 3.6 0.0 1.0
HB2 A:CYS346 3.7 0.0 1.0
N A:CYS373 3.7 0.0 1.0
N A:CYS349 3.8 0.0 1.0
N A:CYS376 4.1 0.0 1.0
CA A:CYS373 4.1 0.0 1.0
HB3 A:GLU375 4.1 0.0 1.0
CB A:GLU348 4.2 0.0 1.0
CA A:CYS349 4.3 0.0 1.0
HB3 A:CYS376 4.3 0.0 1.0
HB3 A:TYR372 4.3 0.0 1.0
CA A:CYS376 4.3 0.0 1.0
HB3 A:CYS349 4.3 0.0 1.0
HZ A:PHE353 4.3 0.0 1.0
HB2 A:CYS373 4.3 0.0 1.0
O A:CYS373 4.4 0.0 1.0
HA A:CYS376 4.4 0.0 1.0
HB3 A:GLU348 4.5 0.0 1.0
HA A:TYR372 4.5 0.0 1.0
H A:GLU348 4.5 0.0 1.0
HE1 A:PHE353 4.5 0.0 1.0
C A:GLU348 4.6 0.0 1.0
HD1 A:TYR372 4.6 0.0 1.0
OE1 A:GLU348 4.6 0.0 1.0
C A:CYS373 4.7 0.0 1.0
C A:TYR372 4.8 0.0 1.0
HA A:CYS349 4.8 0.0 1.0
CA A:GLU348 4.8 0.0 1.0
CA A:CYS346 4.8 0.0 1.0
N A:GLU348 4.9 0.0 1.0
CZ A:PHE353 5.0 0.0 1.0

Reference:

C.Wang, J.Shen, Z.Yang, P.Chen, B.Zhao, W.Hu, W.Lan, X.Tong, H.Wu, G.Li, C.Cao. Structural Basis For Site-Specific Reading of Unmodified R2 of Histone H3 Tail By UHRF1 Phd Finger. Cell Res. V. 21 1379 2011.
ISSN: ISSN 1001-0602
PubMed: 21808299
DOI: 10.1038/CR.2011.123
Page generated: Wed Dec 16 03:37:30 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy