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Zinc in PDB 2lfd: Solution uc(Nmr) Structure of Diiron Protein in Presence of 2 Eq ZN2+, Northeast Structural Genomics Consortium Target OR21

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution uc(Nmr) Structure of Diiron Protein in Presence of 2 Eq ZN2+, Northeast Structural Genomics Consortium Target OR21 (pdb code 2lfd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution uc(Nmr) Structure of Diiron Protein in Presence of 2 Eq ZN2+, Northeast Structural Genomics Consortium Target OR21, PDB code: 2lfd:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2lfd

Go back to Zinc Binding Sites List in 2lfd
Zinc binding site 1 out of 2 in the Solution uc(Nmr) Structure of Diiron Protein in Presence of 2 Eq ZN2+, Northeast Structural Genomics Consortium Target OR21


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution uc(Nmr) Structure of Diiron Protein in Presence of 2 Eq ZN2+, Northeast Structural Genomics Consortium Target OR21 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn300

b:0.0
occ:1.00
OE1 A:GLU44 1.6 0.0 1.0
OE2 A:GLU104 1.6 0.0 1.0
OE1 A:GLU74 1.7 0.0 1.0
CD A:GLU44 2.2 0.0 1.0
OE2 A:GLU44 2.2 0.0 1.0
ND1 A:HIS77 2.2 0.0 1.0
NE2 A:HIS100 2.4 0.0 1.0
CD A:GLU104 2.8 0.0 1.0
CD A:GLU74 2.9 0.0 1.0
HA A:GLU74 3.1 0.0 1.0
CE1 A:HIS77 3.1 0.0 1.0
CG A:HIS77 3.3 0.0 1.0
HB2 A:HIS77 3.3 0.0 1.0
HE1 A:HIS77 3.3 0.0 1.0
CE1 A:HIS100 3.3 0.0 1.0
CD2 A:HIS100 3.4 0.0 1.0
OE2 A:GLU74 3.5 0.0 1.0
HE1 A:HIS100 3.5 0.0 1.0
OE1 A:GLU104 3.6 0.0 1.0
CB A:HIS77 3.6 0.0 1.0
HB3 A:HIS77 3.6 0.0 1.0
CG A:GLU44 3.6 0.0 1.0
HD2 A:HIS100 3.7 0.0 1.0
HB3 A:GLU74 3.9 0.0 1.0
CG A:GLU104 3.9 0.0 1.0
HG3 A:GLU44 3.9 0.0 1.0
HG3 A:GLU104 4.0 0.0 1.0
HG2 A:GLU104 4.0 0.0 1.0
CA A:GLU74 4.1 0.0 1.0
CG A:GLU74 4.1 0.0 1.0
HB3 A:GLU44 4.2 0.0 1.0
HG2 A:GLU44 4.2 0.0 1.0
ZN A:ZN400 4.2 0.0 1.0
CB A:GLU74 4.2 0.0 1.0
NE2 A:HIS77 4.3 0.0 1.0
HE1 A:HIS107 4.4 0.0 1.0
CD2 A:HIS77 4.4 0.0 1.0
ND1 A:HIS100 4.5 0.0 1.0
CB A:GLU44 4.5 0.0 1.0
CG A:HIS100 4.6 0.0 1.0
HG3 A:GLU74 4.7 0.0 1.0
O A:GLU74 4.7 0.0 1.0
HA A:GLU44 4.7 0.0 1.0
HG2 A:GLU74 4.8 0.0 1.0
C A:GLU74 4.9 0.0 1.0
HB3 A:ASP103 5.0 0.0 1.0
O A:ASP73 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2lfd

Go back to Zinc Binding Sites List in 2lfd
Zinc binding site 2 out of 2 in the Solution uc(Nmr) Structure of Diiron Protein in Presence of 2 Eq ZN2+, Northeast Structural Genomics Consortium Target OR21


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution uc(Nmr) Structure of Diiron Protein in Presence of 2 Eq ZN2+, Northeast Structural Genomics Consortium Target OR21 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:0.0
occ:1.00
OE1 A:GLU11 1.6 0.0 1.0
OE2 A:GLU74 1.6 0.0 1.0
OE1 A:GLU104 1.6 0.0 1.0
ND1 A:HIS107 2.0 0.0 1.0
CD A:GLU11 2.5 0.0 1.0
CD A:GLU104 2.8 0.0 1.0
OE2 A:GLU11 2.8 0.0 1.0
CD A:GLU74 2.8 0.0 1.0
CE1 A:HIS107 2.9 0.0 1.0
HA A:GLU104 2.9 0.0 1.0
HE1 A:HIS107 3.0 0.0 1.0
CG A:HIS107 3.1 0.0 1.0
HB2 A:HIS107 3.2 0.0 1.0
OE2 A:GLU104 3.3 0.0 1.0
HG23 A:ILE70 3.4 0.0 1.0
OE1 A:GLU74 3.4 0.0 1.0
CB A:HIS107 3.5 0.0 1.0
HB3 A:HIS107 3.6 0.0 1.0
CG A:GLU11 3.9 0.0 1.0
HB3 A:GLU104 3.9 0.0 1.0
CA A:GLU104 3.9 0.0 1.0
CG A:GLU74 3.9 0.0 1.0
CG A:GLU104 4.0 0.0 1.0
NE2 A:HIS107 4.1 0.0 1.0
HG2 A:GLU74 4.1 0.0 1.0
HG3 A:GLU74 4.1 0.0 1.0
HG22 A:ILE70 4.1 0.0 1.0
HG3 A:GLU11 4.1 0.0 1.0
CD2 A:HIS107 4.1 0.0 1.0
CB A:GLU104 4.2 0.0 1.0
CG2 A:ILE70 4.2 0.0 1.0
HE1 A:HIS77 4.2 0.0 1.0
ZN A:ZN300 4.2 0.0 1.0
HB3 A:GLU11 4.2 0.0 1.0
HA A:GLU11 4.4 0.0 1.0
HG21 A:ILE70 4.4 0.0 1.0
CB A:GLU11 4.6 0.0 1.0
HG3 A:GLU104 4.6 0.0 1.0
HG2 A:GLU11 4.6 0.0 1.0
O A:GLU104 4.7 0.0 1.0
HG2 A:GLU104 4.7 0.0 1.0
N A:GLU104 4.8 0.0 1.0
C A:GLU104 4.8 0.0 1.0
HE2 A:HIS107 4.9 0.0 1.0
OE2 A:GLU44 4.9 0.0 1.0
HD11 A:ILE70 5.0 0.0 1.0
HH A:TYR51 5.0 0.0 1.0
CE1 A:HIS77 5.0 0.0 1.0

Reference:

Y.Wu, M.Pires, J.L.Mills, A.Reig, T.Szyperski, G.T.Montelione, W.Degrado. Solution uc(Nmr) Structure of Diiron Protein in Presence of 2 Eq ZN2+ To Be Published.
Page generated: Wed Dec 16 03:36:59 2020

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