Zinc in PDB 2l6m: Structure of C-Terminal Dsrbd of the Fission Yeast Dicer (DCR1)

The binding sites of Zinc atom in the Structure of C-Terminal Dsrbd of the Fission Yeast Dicer (DCR1) (pdb code 2l6m). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of C-Terminal Dsrbd of the Fission Yeast Dicer (DCR1), PDB code: 2l6m:

Zinc binding site 1 out of 1 in the Structure of C-Terminal Dsrbd of the Fission Yeast Dicer (DCR1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of C-Terminal Dsrbd of the Fission Yeast Dicer (DCR1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:15.4 occ:1.00 NE2 A:HIS55 2.0 61.1 1.0 SG A:CYS93 2.3 2.4 1.0 SG A:CYS95 2.3 62.5 1.0 SG A:CYS18 2.3 60.0 1.0 CE1 A:HIS55 3.0 15.6 1.0 CD2 A:HIS55 3.1 70.3 1.0 HA A:CYS18 3.1 32.0 1.0 HE1 A:HIS55 3.2 44.4 1.0 HD2 A:HIS55 3.3 4.1 1.0 HB2 A:CYS95 3.4 62.5 1.0 HB2 A:CYS93 3.4 5.5 1.0 CB A:CYS18 3.5 73.1 1.0 CB A:CYS93 3.5 71.4 1.0 HB3 A:ASP20 3.5 38.2 1.0 CB A:CYS95 3.5 61.0 1.0 HB2 A:CYS18 3.6 11.1 1.0 H A:CYS95 3.7 38.2 1.0 H A:ASP20 3.8 38.2 1.0 CA A:CYS18 3.8 21.4 1.0 HB3 A:CYS93 3.8 38.2 1.0 H A:GLU19 3.9 38.2 1.0 ND1 A:HIS55 4.2 55.2 1.0 CG A:HIS55 4.2 2.1 1.0 N A:CYS95 4.2 22.4 1.0 HB3 A:CYS95 4.3 38.2 1.0 HH21 A:ARG54 4.4 53.5 1.0 HE A:ARG54 4.4 23.5 1.0 HB3 A:CYS18 4.4 38.2 1.0 CA A:CYS95 4.5 14.1 1.0 O A:GLY17 4.5 53.5 1.0 OE1 A:GLU19 4.5 22.2 1.0 CB A:ASP20 4.5 41.2 1.0 N A:GLU19 4.6 53.4 1.0 HB2 A:ASP20 4.6 2.2 1.0 H A:ASN94 4.6 38.2 1.0 N A:ASP20 4.7 4.3 1.0 NH2 A:ARG54 4.7 71.1 1.0 NE A:ARG54 4.7 63.3 1.0 C A:CYS18 4.7 11.2 1.0 CA A:CYS93 4.8 4.2 1.0 HD2 A:PHE21 4.8 21.4 1.0 HA A:CYS95 4.8 71.3 1.0 N A:CYS18 4.9 24.4 1.0 O A:ASP20 4.9 1.2 1.0 CZ A:ARG54 4.9 11.2 1.0 N A:ASN94 4.9 70.2 1.0 HD3 A:ARG54 5.0 38.2 1.0 C A:CYS93 5.0 75.4 1.0

P.Barraud, S.Emmerth, Y.Shimada, H.R.Hotz, F.H.Allain, M.Buhler. An Extended Dsrbd with A Novel Zinc-Binding Motif Mediates Nuclear Retention of Fission Yeast Dicer. Embo J. V. 30 4223 2011.
ISSN: ISSN 0261-4189
PubMed: 21847092
DOI: 10.1038/EMBOJ.2011.300