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Zinc in PDB 2l5u: Structure of the First Phd Finger (PHD1) From CHD4 (MI2B)

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the First Phd Finger (PHD1) From CHD4 (MI2B) (pdb code 2l5u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the First Phd Finger (PHD1) From CHD4 (MI2B), PDB code: 2l5u:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2l5u

Go back to Zinc Binding Sites List in 2l5u
Zinc binding site 1 out of 2 in the Structure of the First Phd Finger (PHD1) From CHD4 (MI2B)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the First Phd Finger (PHD1) From CHD4 (MI2B) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn62

b:0.0
occ:1.00
SG A:CYS29 2.3 0.0 1.0
SG A:CYS55 2.3 0.0 1.0
SG A:CYS52 2.3 0.0 1.0
SG A:CYS26 2.3 0.0 1.0
H A:CYS52 2.9 0.0 1.0
HG1 A:THR28 2.9 0.0 1.0
HB2 A:CYS29 3.1 0.0 1.0
H A:CYS29 3.1 0.0 1.0
OG1 A:THR28 3.2 0.0 1.0
CB A:CYS29 3.3 0.0 1.0
HB3 A:CYS52 3.3 0.0 1.0
HB2 A:CYS55 3.4 0.0 1.0
CB A:CYS55 3.4 0.0 1.0
CB A:CYS52 3.4 0.0 1.0
HB2 A:CYS26 3.4 0.0 1.0
CB A:CYS26 3.4 0.0 1.0
N A:CYS52 3.5 0.0 1.0
H A:CYS55 3.6 0.0 1.0
HA A:CYS55 3.6 0.0 1.0
HB3 A:CYS26 3.7 0.0 1.0
HH11 A:ARG31 3.8 0.0 1.0
N A:CYS29 3.8 0.0 1.0
HB3 A:SER51 3.8 0.0 1.0
CA A:CYS55 3.8 0.0 1.0
N A:CYS55 3.9 0.0 1.0
CA A:CYS52 4.0 0.0 1.0
HB3 A:CYS29 4.1 0.0 1.0
HA A:SER51 4.2 0.0 1.0
CA A:CYS29 4.2 0.0 1.0
H A:THR28 4.2 0.0 1.0
O A:CYS52 4.3 0.0 1.0
HD2 A:ARG31 4.3 0.0 1.0
HB3 A:CYS55 4.3 0.0 1.0
HB2 A:CYS52 4.3 0.0 1.0
C A:SER51 4.4 0.0 1.0
C A:CYS52 4.5 0.0 1.0
CB A:THR28 4.5 0.0 1.0
HB3 A:HIS54 4.6 0.0 1.0
HD3 A:ARG31 4.6 0.0 1.0
NH1 A:ARG31 4.6 0.0 1.0
CA A:SER51 4.6 0.0 1.0
CB A:SER51 4.7 0.0 1.0
HA A:CYS29 4.8 0.0 1.0
C A:THR28 4.8 0.0 1.0
HB2 A:ARG31 4.8 0.0 1.0
CA A:CYS26 4.8 0.0 1.0
H A:HIS54 4.9 0.0 1.0
HH12 A:ARG31 4.9 0.0 1.0
HB A:THR28 4.9 0.0 1.0
HH A:TYR33 4.9 0.0 1.0
HA A:CYS52 4.9 0.0 1.0
N A:THR28 5.0 0.0 1.0
CD A:ARG31 5.0 0.0 1.0
C A:HIS54 5.0 0.0 1.0
HA A:CYS26 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2l5u

Go back to Zinc Binding Sites List in 2l5u
Zinc binding site 2 out of 2 in the Structure of the First Phd Finger (PHD1) From CHD4 (MI2B)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the First Phd Finger (PHD1) From CHD4 (MI2B) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn63

b:0.0
occ:1.00
ND1 A:HIS34 2.0 0.0 1.0
SG A:CYS37 2.3 0.0 1.0
SG A:CYS14 2.3 0.0 1.0
SG A:CYS17 2.3 0.0 1.0
H A:HIS34 2.6 0.0 1.0
HB2 A:HIS34 2.9 0.0 1.0
CE1 A:HIS34 3.0 0.0 1.0
CG A:HIS34 3.0 0.0 1.0
HB2 A:CYS17 3.0 0.0 1.0
H A:CYS17 3.2 0.0 1.0
HB2 A:CYS14 3.2 0.0 1.0
HE1 A:HIS34 3.2 0.0 1.0
CB A:CYS14 3.3 0.0 1.0
CB A:CYS17 3.3 0.0 1.0
HB3 A:CYS37 3.3 0.0 1.0
CB A:CYS37 3.3 0.0 1.0
HB A:VAL16 3.3 0.0 1.0
CB A:HIS34 3.4 0.0 1.0
N A:HIS34 3.5 0.0 1.0
HB3 A:CYS14 3.5 0.0 1.0
HB2 A:CYS37 3.6 0.0 1.0
N A:CYS17 3.8 0.0 1.0
CA A:HIS34 4.0 0.0 1.0
HB3 A:CYS17 4.1 0.0 1.0
NE2 A:HIS34 4.1 0.0 1.0
H A:CYS37 4.2 0.0 1.0
CA A:CYS17 4.2 0.0 1.0
CD2 A:HIS34 4.2 0.0 1.0
HG23 A:VAL36 4.2 0.0 1.0
HB2 A:TYR33 4.2 0.0 1.0
HG21 A:ILE23 4.2 0.0 1.0
HA A:TYR33 4.2 0.0 1.0
HB3 A:HIS34 4.4 0.0 1.0
CB A:VAL16 4.4 0.0 1.0
H A:VAL16 4.5 0.0 1.0
C A:TYR33 4.6 0.0 1.0
HB3 A:TYR33 4.6 0.0 1.0
CA A:CYS37 4.7 0.0 1.0
CA A:CYS14 4.7 0.0 1.0
CA A:TYR33 4.7 0.0 1.0
CB A:TYR33 4.7 0.0 1.0
C A:VAL16 4.7 0.0 1.0
N A:CYS37 4.8 0.0 1.0
HG22 A:VAL16 4.8 0.0 1.0
HA A:CYS17 4.8 0.0 1.0
C A:HIS34 4.8 0.0 1.0
O A:HIS34 4.8 0.0 1.0
HG12 A:VAL16 4.9 0.0 1.0
HA A:HIS34 4.9 0.0 1.0
HA A:CYS14 4.9 0.0 1.0
HE2 A:HIS34 5.0 0.0 1.0

Reference:

R.E.Mansfield, C.A.Musselman, A.H.Kwan, S.S.Oliver, A.L.Garske, F.Davrazou, J.M.Denu, T.G.Kutateladze, J.P.Mackay. Plant Homeodomain (Phd) Fingers of CHD4 Are Histone H3-Binding Modules with Preference For Unmodified H3K4 and Methylated H3K9 J.Biol.Chem. V. 286 11779 2011.
ISSN: ISSN 0021-9258
PubMed: 21278251
DOI: 10.1074/JBC.M110.208207
Page generated: Wed Dec 16 03:36:11 2020

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