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Zinc in PDB 2jsd: Solution Structure of MMP20 Complexed with Nngh

Other elements in 2jsd:

The structure of Solution Structure of MMP20 Complexed with Nngh also contains other interesting chemical elements:

Calcium (Ca) 40 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of MMP20 Complexed with Nngh (pdb code 2jsd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of MMP20 Complexed with Nngh, PDB code: 2jsd:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2jsd

Go back to Zinc Binding Sites List in 2jsd
Zinc binding site 1 out of 2 in the Solution Structure of MMP20 Complexed with Nngh


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of MMP20 Complexed with Nngh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn275

b:0.0
occ:1.00
OD2 A:ASP178 2.1 0.0 1.0
NE2 A:HIS191 2.2 0.0 1.0
ND1 A:HIS204 2.2 0.0 1.0
NE2 A:HIS176 2.2 0.0 1.0
CG A:ASP178 2.7 0.0 1.0
CD2 A:HIS176 3.0 0.0 1.0
CE1 A:HIS204 3.1 0.0 1.0
HD2 A:HIS176 3.1 0.0 1.0
OD1 A:ASP178 3.1 0.0 1.0
CD2 A:HIS191 3.2 0.0 1.0
CE1 A:HIS191 3.2 0.0 1.0
HE1 A:HIS204 3.2 0.0 1.0
CG A:HIS204 3.3 0.0 1.0
CE1 A:HIS176 3.3 0.0 1.0
HB2 A:HIS204 3.4 0.0 1.0
HD2 A:HIS191 3.4 0.0 1.0
HE1 A:HIS191 3.4 0.0 1.0
HE1 A:PHE193 3.5 0.0 1.0
HE1 A:HIS176 3.6 0.0 1.0
HB2 A:ASP178 3.6 0.0 1.0
CB A:ASP178 3.7 0.0 1.0
CB A:HIS204 3.8 0.0 1.0
HD2 A:TYR180 3.8 0.0 1.0
HB3 A:HIS204 3.9 0.0 1.0
HB3 A:ASP178 4.0 0.0 1.0
HE2 A:TYR180 4.0 0.0 1.0
HD1 A:PHE193 4.3 0.0 1.0
CG A:HIS176 4.3 0.0 1.0
NE2 A:HIS204 4.3 0.0 1.0
ND1 A:HIS191 4.3 0.0 1.0
CG A:HIS191 4.3 0.0 1.0
ND1 A:HIS176 4.4 0.0 1.0
CD2 A:HIS204 4.4 0.0 1.0
CE1 A:PHE193 4.4 0.0 1.0
O A:TYR180 4.5 0.0 1.0
HE2 A:PHE182 4.5 0.0 1.0
CD2 A:TYR180 4.6 0.0 1.0
CE2 A:TYR180 4.7 0.0 1.0
HZ A:PHE182 4.7 0.0 1.0
O A:HIS191 4.7 0.0 1.0
CD1 A:PHE193 4.7 0.0 1.0
CE2 A:PHE182 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2jsd

Go back to Zinc Binding Sites List in 2jsd
Zinc binding site 2 out of 2 in the Solution Structure of MMP20 Complexed with Nngh


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of MMP20 Complexed with Nngh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn276

b:0.0
occ:1.00
NE2 A:HIS226 2.0 0.0 1.0
NE2 A:HIS230 2.1 0.0 1.0
NE2 A:HIS236 2.1 0.0 1.0
O5 A:NGH277 2.2 0.0 1.0
O4 A:NGH277 2.2 0.0 1.0
C11 A:NGH277 2.6 0.0 1.0
N1 A:NGH277 2.7 0.0 1.0
CD2 A:HIS236 2.7 0.0 1.0
HD2 A:HIS236 2.9 0.0 1.0
CD2 A:HIS226 3.0 0.0 1.0
CD2 A:HIS230 3.0 0.0 1.0
CE1 A:HIS236 3.1 0.0 1.0
CE1 A:HIS226 3.1 0.0 1.0
HD2 A:HIS226 3.1 0.0 1.0
CE1 A:HIS230 3.1 0.0 1.0
HD2 A:HIS230 3.2 0.0 1.0
HE1 A:HIS226 3.4 0.0 1.0
HE1 A:HIS236 3.4 0.0 1.0
HE1 A:HIS230 3.4 0.0 1.0
H92 A:NGH277 3.6 0.0 1.0
HN1 A:NGH277 3.7 0.0 1.0
CG A:HIS236 3.8 0.0 1.0
H91 A:NGH277 3.8 0.0 1.0
C10 A:NGH277 3.8 0.0 1.0
ND1 A:HIS236 3.9 0.0 1.0
H102 A:NGH277 4.1 0.0 1.0
C9 A:NGH277 4.1 0.0 1.0
CG A:HIS226 4.1 0.0 1.0
ND1 A:HIS226 4.2 0.0 1.0
CG A:HIS230 4.2 0.0 1.0
N A:NGH277 4.2 0.0 1.0
ND1 A:HIS230 4.3 0.0 1.0
OE2 A:GLU227 4.3 0.0 1.0
H101 A:NGH277 4.6 0.0 1.0
HG2 A:GLU227 4.7 0.0 1.0
O A:MET244 4.7 0.0 1.0
HA A:PRO246 4.8 0.0 1.0
C1 A:NGH277 4.8 0.0 1.0
HB3 A:MET244 4.8 0.0 1.0
HD1 A:HIS236 4.8 0.0 1.0
C6 A:NGH277 4.8 0.0 1.0
HA A:GLU227 4.9 0.0 1.0
HA A:MET244 4.9 0.0 1.0
H1 A:NGH277 4.9 0.0 1.0

Reference:

Y.Arendt, L.Banci, I.Bertini, F.Cantini, R.Cozzi, R.Del Conte, L.Gonnelli. Catalytic Domain of MMP20 (Enamelysin) - the uc(Nmr) Structure of A New Matrix Metalloproteinase. Febs Lett. V. 581 4723 2007.
ISSN: ISSN 0014-5793
PubMed: 17869250
DOI: 10.1016/J.FEBSLET.2007.08.069
Page generated: Wed Dec 16 03:32:43 2020

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