Atomistry » Zinc » PDB 2iux-2ja7 » 2iwe
Atomistry »
  Zinc »
    PDB 2iux-2ja7 »
      2iwe »

Zinc in PDB 2iwe: Structure of A Cavity Mutant (H117G) of Pseudomonas Aeruginosa Azurin

Protein crystallography data

The structure of Structure of A Cavity Mutant (H117G) of Pseudomonas Aeruginosa Azurin, PDB code: 2iwe was solved by T.E.De Jongh, A.M.M.Van Roon, M.Prudencio, M.Ubbink, G.W.Canters, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.66 / 2.83
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 42.664, 49.718, 66.065, 109.25, 94.96, 99.24
R / Rfree (%) 19.2 / 23.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of A Cavity Mutant (H117G) of Pseudomonas Aeruginosa Azurin (pdb code 2iwe). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of A Cavity Mutant (H117G) of Pseudomonas Aeruginosa Azurin, PDB code: 2iwe:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 2iwe

Go back to Zinc Binding Sites List in 2iwe
Zinc binding site 1 out of 4 in the Structure of A Cavity Mutant (H117G) of Pseudomonas Aeruginosa Azurin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of A Cavity Mutant (H117G) of Pseudomonas Aeruginosa Azurin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1129

b:33.2
occ:1.00
O A:GLY45 2.0 34.4 1.0
ND1 A:HIS46 2.1 26.2 1.0
N4 A:2IH1001 2.1 33.6 1.0
C5 A:2IH1001 2.3 35.5 1.0
SG A:CYS112 2.3 30.2 1.0
CE1 A:HIS46 3.0 25.2 1.0
C A:GLY45 3.1 29.6 1.0
CG A:HIS46 3.1 25.6 1.0
CA A:HIS46 3.1 26.9 1.0
SD A:MET121 3.3 41.3 0.5
C3 A:2IH1001 3.3 35.0 1.0
CB A:CYS112 3.4 30.1 1.0
CB A:HIS46 3.4 24.9 1.0
N A:HIS46 3.5 28.5 1.0
SD A:MET121 3.6 33.4 0.5
C1 A:2IH1001 3.6 36.4 1.0
CB A:PHE114 3.8 25.2 1.0
N2 A:2IH1001 4.1 35.3 1.0
NE2 A:HIS46 4.1 25.1 1.0
CD2 A:HIS46 4.2 25.9 1.0
CA A:GLY45 4.4 25.7 1.0
C A:HIS46 4.4 29.8 1.0
CG A:PHE114 4.4 26.5 1.0
N A:GLY45 4.6 24.3 1.0
N A:ASN47 4.6 32.7 1.0
CG A:MET121 4.6 40.1 0.5
CG A:MET121 4.7 33.2 0.5
CE A:MET121 4.7 41.5 0.5
O A:MET44 4.7 25.5 1.0
C A:MET44 4.8 25.8 1.0
CA A:CYS112 4.8 28.4 1.0
CD1 A:PHE114 4.9 25.7 1.0
CE A:MET121 4.9 33.5 0.5
N A:PHE114 5.0 26.9 1.0
CA A:PHE114 5.0 26.4 1.0

Zinc binding site 2 out of 4 in 2iwe

Go back to Zinc Binding Sites List in 2iwe
Zinc binding site 2 out of 4 in the Structure of A Cavity Mutant (H117G) of Pseudomonas Aeruginosa Azurin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of A Cavity Mutant (H117G) of Pseudomonas Aeruginosa Azurin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1129

b:37.5
occ:1.00
O D:GLY45 2.0 34.2 1.0
ND1 D:HIS46 2.0 26.4 1.0
N4 D:2IH1001 2.1 42.8 1.0
C3 D:2IH1001 2.3 42.9 1.0
SG D:CYS112 2.3 30.8 1.0
CE1 D:HIS46 2.9 25.0 1.0
CG D:HIS46 3.0 25.5 1.0
C D:GLY45 3.0 29.5 1.0
CA D:HIS46 3.1 26.8 1.0
CB D:HIS46 3.4 24.7 1.0
C5 D:2IH1001 3.4 44.2 1.0
N D:HIS46 3.4 28.5 1.0
CB D:CYS112 3.4 30.4 1.0
SD D:MET121 3.5 36.0 1.0
N2 D:2IH1001 3.6 42.5 1.0
CB D:PHE114 3.9 25.4 1.0
NE2 D:HIS46 4.0 25.2 1.0
CD2 D:HIS46 4.1 25.7 1.0
C1 D:2IH1001 4.1 42.3 1.0
CA D:GLY45 4.3 26.0 1.0
C D:HIS46 4.4 29.7 1.0
CE D:MET121 4.4 33.0 1.0
CG D:PHE114 4.5 26.5 1.0
N D:GLY45 4.6 24.3 1.0
N D:ASN47 4.6 32.9 1.0
C6 D:2IH1001 4.6 41.8 1.0
C D:MET44 4.8 25.8 1.0
O D:MET44 4.8 25.4 1.0
CA D:CYS112 4.8 28.8 1.0
CD1 D:PHE114 5.0 26.0 1.0
CG D:MET121 5.0 36.7 1.0

Zinc binding site 3 out of 4 in 2iwe

Go back to Zinc Binding Sites List in 2iwe
Zinc binding site 3 out of 4 in the Structure of A Cavity Mutant (H117G) of Pseudomonas Aeruginosa Azurin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of A Cavity Mutant (H117G) of Pseudomonas Aeruginosa Azurin within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn1129

b:36.0
occ:1.00
O G:GLY45 2.0 34.1 1.0
N15 D:2IH1001 2.1 40.0 1.0
ND1 G:HIS46 2.1 26.2 1.0
SG G:CYS112 2.3 30.3 1.0
CE1 G:HIS46 3.0 25.0 1.0
C16 D:2IH1001 3.1 41.9 1.0
C G:GLY45 3.1 29.3 1.0
C14 D:2IH1001 3.1 43.7 1.0
CG G:HIS46 3.1 25.2 1.0
CA G:HIS46 3.2 26.8 1.0
SD G:MET121 3.2 34.6 1.0
CB G:CYS112 3.3 30.2 1.0
CB G:HIS46 3.5 24.9 1.0
N G:HIS46 3.5 28.5 1.0
CB G:PHE114 3.7 25.3 1.0
NE2 G:HIS46 4.1 24.9 1.0
N12 D:2IH1001 4.2 43.1 1.0
C13 D:2IH1001 4.2 44.1 1.0
CD2 G:HIS46 4.2 25.3 1.0
CG G:PHE114 4.3 26.2 1.0
CA G:GLY45 4.4 25.9 1.0
C G:HIS46 4.4 29.6 1.0
CE G:MET121 4.5 32.5 1.0
CG G:MET121 4.6 35.2 1.0
N G:ASN47 4.6 32.2 1.0
N G:GLY45 4.6 24.9 1.0
CA G:CYS112 4.7 28.4 1.0
CD1 G:PHE114 4.8 25.9 1.0
C G:MET44 4.9 25.9 1.0
O G:MET44 4.9 25.6 1.0
N G:PHE114 4.9 26.8 1.0
CA G:PHE114 4.9 26.5 1.0
CD2 G:PHE114 5.0 27.9 1.0

Zinc binding site 4 out of 4 in 2iwe

Go back to Zinc Binding Sites List in 2iwe
Zinc binding site 4 out of 4 in the Structure of A Cavity Mutant (H117G) of Pseudomonas Aeruginosa Azurin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of A Cavity Mutant (H117G) of Pseudomonas Aeruginosa Azurin within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn1129

b:32.6
occ:1.00
O J:GLY45 2.0 33.9 1.0
ND1 J:HIS46 2.1 26.5 1.0
N15 A:2IH1001 2.1 29.3 1.0
SG J:CYS112 2.3 29.8 1.0
C16 A:2IH1001 2.5 29.3 1.0
C J:GLY45 3.0 29.5 1.0
CE1 J:HIS46 3.0 25.2 1.0
CA J:HIS46 3.1 26.9 1.0
CG J:HIS46 3.1 26.0 1.0
C14 A:2IH1001 3.4 28.3 1.0
CB J:CYS112 3.4 30.5 1.0
N J:HIS46 3.4 28.2 1.0
CB J:HIS46 3.4 25.1 1.0
CB J:PHE114 3.7 25.0 1.0
SD J:MET121 3.7 31.6 1.0
N12 A:2IH1001 3.8 29.6 1.0
NE2 J:HIS46 4.1 25.0 1.0
CD2 J:HIS46 4.2 25.8 1.0
C13 A:2IH1001 4.2 28.3 1.0
CA J:GLY45 4.3 26.1 1.0
CG J:PHE114 4.3 26.0 1.0
C J:HIS46 4.4 29.8 1.0
N J:ASN47 4.6 32.6 1.0
O J:MET44 4.6 25.9 1.0
N J:GLY45 4.6 24.2 1.0
C J:MET44 4.7 26.1 1.0
CA J:CYS112 4.8 28.7 1.0
CD1 J:PHE114 4.8 25.8 1.0
CE J:MET121 4.9 29.1 1.0
N J:PHE114 4.9 26.1 1.0
CA J:PHE114 4.9 26.2 1.0
CG J:MET121 5.0 31.0 1.0
C11 A:2IH1001 5.0 29.1 1.0

Reference:

T.E.De Jongh, A.M.M.Van Roon, M.Prudencio, M.Ubbink, G.W.Canters. Click-Chemistry with An Active Site Variant of Azurin Eur.J.Inorg.Chem. V.2006 3861 2006.
ISSN: ISSN 1434-1948
DOI: 10.1002/EJIC.200600574
Page generated: Wed Dec 16 03:31:32 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy