Zinc in PDB 2hjg: The Crystal Structure of the B. Subtilis Yphc Gtpase in Complex with Gdp

The structure of The Crystal Structure of the B. Subtilis Yphc Gtpase in Complex with Gdp, PDB code: 2hjg was solved by S.P.Muench, L.Xu, S.E.Sedelnikova, D.W.Rice, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.96 / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	62.711, 65.045, 110.610, 90.00, 90.00, 90.00
R / Rfree (%)	21.5 / 27.4

The binding sites of Zinc atom in the The Crystal Structure of the B. Subtilis Yphc Gtpase in Complex with Gdp (pdb code 2hjg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of the B. Subtilis Yphc Gtpase in Complex with Gdp, PDB code: 2hjg:

Zinc binding site 1 out of 1 in the The Crystal Structure of the B. Subtilis Yphc Gtpase in Complex with Gdp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of the B. Subtilis Yphc Gtpase in Complex with Gdp within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn900 b:54.2 occ:1.00 NE2 A:HIS406 2.0 45.5 1.0 ND1 A:HIS375 2.1 49.9 1.0 CE1 A:HIS375 2.9 50.4 1.0 CE1 A:HIS406 2.9 45.4 1.0 CD2 A:HIS406 3.0 44.8 1.0 CG A:HIS375 3.1 49.2 1.0 CB A:HIS375 3.5 48.4 1.0 CA A:HIS375 3.7 48.2 1.0 NE2 A:HIS375 3.9 50.6 1.0 ND1 A:HIS406 4.0 44.8 1.0 CD2 A:HIS375 4.1 49.9 1.0 CG A:HIS406 4.1 44.5 1.0 O A:THR374 4.3 48.0 1.0 C A:HIS375 4.7 47.6 1.0 N A:HIS375 4.7 48.2 1.0 N A:ASN376 4.9 47.2 1.0 C A:THR374 4.9 47.9 1.0

S.P.Muench, L.Xu, S.E.Sedelnikova, D.W.Rice. The Essential Gtpase Yphc Displays A Major Domain Rearrangement Associated with Nucleotide Binding. Proc.Natl.Acad.Sci.Usa V. 103 12359 2006.
ISSN: ISSN 0027-8424
PubMed: 16894162
DOI: 10.1073/PNAS.0602585103