Zinc in PDB 2hgh: Transcription Factor Iiia Zinc Fingers 4-6 Bound to 5S Rrna 55MER (uc(Nmr) Structure)

The binding sites of Zinc atom in the Transcription Factor Iiia Zinc Fingers 4-6 Bound to 5S Rrna 55MER (uc(Nmr) Structure) (pdb code 2hgh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Transcription Factor Iiia Zinc Fingers 4-6 Bound to 5S Rrna 55MER (uc(Nmr) Structure), PDB code: 2hgh:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Transcription Factor Iiia Zinc Fingers 4-6 Bound to 5S Rrna 55MER (uc(Nmr) Structure)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Transcription Factor Iiia Zinc Fingers 4-6 Bound to 5S Rrna 55MER (uc(Nmr) Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn191 b:0.0 occ:1.00 NE2 A:HIS129 2.1 0.0 1.0 NE2 A:HIS125 2.1 0.0 1.0 SG A:CYS112 2.2 0.0 1.0 SG A:CYS107 2.3 0.0 1.0 CD2 A:HIS125 2.7 0.0 1.0 HD2 A:HIS125 2.7 0.0 1.0 CD2 A:HIS129 3.0 0.0 1.0 HB3 A:CYS107 3.1 0.0 1.0 HD2 A:HIS129 3.1 0.0 1.0 CE1 A:HIS129 3.2 0.0 1.0 CB A:CYS107 3.2 0.0 1.0 CB A:CYS112 3.2 0.0 1.0 HB3 A:PHE109 3.3 0.0 1.0 HB2 A:CYS112 3.3 0.0 1.0 CE1 A:HIS125 3.3 0.0 1.0 HB2 A:PHE109 3.4 0.0 1.0 HB3 A:CYS112 3.4 0.0 1.0 HE1 A:HIS129 3.5 0.0 1.0 HB2 A:CYS107 3.5 0.0 1.0 HE1 A:HIS125 3.8 0.0 1.0 CB A:PHE109 3.9 0.0 1.0 CG A:HIS125 4.0 0.0 1.0 HG2 A:GLN126 4.0 0.0 1.0 H A:PHE109 4.0 0.0 1.0 HB3 A:LYS114 4.1 0.0 1.0 H A:LYS114 4.2 0.0 1.0 CG A:HIS129 4.2 0.0 1.0 HB2 A:LYS114 4.2 0.0 1.0 ND1 A:HIS129 4.3 0.0 1.0 ND1 A:HIS125 4.3 0.0 1.0 HE21 A:GLN126 4.4 0.0 1.0 HA A:GLN126 4.5 0.0 1.0 CA A:CYS112 4.6 0.0 1.0 CA A:CYS107 4.6 0.0 1.0 CB A:LYS114 4.7 0.0 1.0 CG A:PHE109 4.8 0.0 1.0 H A:GLY113 4.8 0.0 1.0 HZ A:PHE116 4.8 0.0 1.0 HA A:CYS112 4.8 0.0 1.0 N A:PHE109 4.8 0.0 1.0 HD3 A:LYS114 4.9 0.0 1.0 C A:CYS107 4.9 0.0 1.0 HE1 A:PHE116 5.0 0.0 1.0 CA A:PHE109 5.0 0.0 1.0 HG3 A:GLN126 5.0 0.0 1.0 CG A:GLN126 5.0 0.0 1.0

Zinc binding site 2 out of 3 in the Transcription Factor Iiia Zinc Fingers 4-6 Bound to 5S Rrna 55MER (uc(Nmr) Structure)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Transcription Factor Iiia Zinc Fingers 4-6 Bound to 5S Rrna 55MER (uc(Nmr) Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn192 b:0.0 occ:1.00 NE2 A:HIS155 2.1 0.0 1.0 NE2 A:HIS159 2.1 0.0 1.0 SG A:CYS137 2.3 0.0 1.0 SG A:CYS142 2.3 0.0 1.0 CD2 A:HIS159 3.0 0.0 1.0 CD2 A:HIS155 3.0 0.0 1.0 HD2 A:HIS159 3.1 0.0 1.0 CE1 A:HIS155 3.2 0.0 1.0 HD2 A:HIS155 3.2 0.0 1.0 CE1 A:HIS159 3.2 0.0 1.0 CB A:CYS142 3.2 0.0 1.0 HB3 A:CYS142 3.3 0.0 1.0 CB A:CYS137 3.3 0.0 1.0 HB2 A:CYS142 3.3 0.0 1.0 HB3 A:CYS137 3.3 0.0 1.0 HB3 A:HIS139 3.4 0.0 1.0 HB2 A:CYS137 3.5 0.0 1.0 HE1 A:HIS155 3.5 0.0 1.0 HE1 A:HIS159 3.5 0.0 1.0 HB2 A:LYS144 3.9 0.0 1.0 HG3 A:LYS144 4.0 0.0 1.0 HB2 A:HIS139 4.1 0.0 1.0 CG A:HIS159 4.2 0.0 1.0 CG A:HIS155 4.2 0.0 1.0 CB A:HIS139 4.2 0.0 1.0 ND1 A:HIS155 4.2 0.0 1.0 ND1 A:HIS159 4.3 0.0 1.0 H A:LYS144 4.4 0.0 1.0 H A:HIS139 4.4 0.0 1.0 CA A:CYS142 4.6 0.0 1.0 HG2 A:LYS144 4.7 0.0 1.0 CA A:CYS137 4.7 0.0 1.0 CG A:LYS144 4.7 0.0 1.0 CB A:LYS144 4.8 0.0 1.0 HE2 A:PHE146 4.9 0.0 1.0 HA A:CYS142 4.9 0.0 1.0 HD2 A:HIS139 4.9 0.0 1.0 HA A:GLU156 4.9 0.0 1.0 HB A:VAL158 5.0 0.0 1.0 H A:ASP143 5.0 0.0 1.0

Zinc binding site 3 out of 3 in the Transcription Factor Iiia Zinc Fingers 4-6 Bound to 5S Rrna 55MER (uc(Nmr) Structure)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Transcription Factor Iiia Zinc Fingers 4-6 Bound to 5S Rrna 55MER (uc(Nmr) Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn193 b:0.0 occ:1.00 NE2 A:HIS188 2.1 0.0 1.0 NE2 A:HIS183 2.1 0.0 1.0 SG A:CYS164 2.3 0.0 1.0 SG A:CYS170 2.3 0.0 1.0 CD2 A:HIS188 3.1 0.0 1.0 CE1 A:HIS188 3.1 0.0 1.0 CD2 A:HIS183 3.1 0.0 1.0 CE1 A:HIS183 3.1 0.0 1.0 CB A:CYS164 3.2 0.0 1.0 HB2 A:CYS164 3.2 0.0 1.0 HD2 A:HIS183 3.3 0.0 1.0 HE1 A:HIS188 3.3 0.0 1.0 HD2 A:HIS188 3.3 0.0 1.0 HB3 A:CYS164 3.3 0.0 1.0 HE1 A:HIS183 3.4 0.0 1.0 CB A:CYS170 3.5 0.0 1.0 HB3 A:PHE172 3.7 0.0 1.0 HB2 A:CYS170 3.7 0.0 1.0 HB3 A:CYS170 3.7 0.0 1.0 HB2 A:LYS166 3.8 0.0 1.0 HB2 A:CYS187 3.9 0.0 1.0 HB3 A:CYS187 4.2 0.0 1.0 ND1 A:HIS188 4.2 0.0 1.0 CG A:HIS188 4.2 0.0 1.0 ND1 A:HIS183 4.2 0.0 1.0 CG A:HIS183 4.3 0.0 1.0 H A:LYS166 4.4 0.0 1.0 H A:PHE172 4.5 0.0 1.0 CB A:CYS187 4.6 0.0 1.0 CA A:CYS164 4.6 0.0 1.0 HG23 A:VAL184 4.6 0.0 1.0 HD1 A:PHE172 4.7 0.0 1.0 HA A:CYS164 4.7 0.0 1.0 CB A:PHE172 4.7 0.0 1.0 HA A:VAL184 4.8 0.0 1.0 CB A:LYS166 4.8 0.0 1.0 H A:ASP167 4.8 0.0 1.0 HB2 A:PHE172 4.9 0.0 1.0 CA A:CYS170 4.9 0.0 1.0 H A:SER171 4.9 0.0 1.0 HG3 A:LYS166 5.0 0.0 1.0 HA A:CYS170 5.0 0.0 1.0 HG2 A:LYS166 5.0 0.0 1.0

B.M.Lee, J.Xu, B.K.Clarkson, M.A.Martinez-Yamout, J.H.Dyson, D.A.Case, J.M.Gottesfeld, P.E.Wright. Induced Fit and 'Lock and Key' Recognition of 5 S Rna By Zinc Fingers of Transcription Factor Iiia J.Mol.Biol. V. 357 275 2006.
ISSN: ISSN 0022-2836
PubMed: 16405997
DOI: 10.1016/J.JMB.2005.12.010