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Zinc in PDB 2hf1: Crystal Structure of the Putative Tetraacyldisaccharide-1-P 4-Kinase From Chromobacterium Violaceum. Nesg Target CVR39.

Enzymatic activity of Crystal Structure of the Putative Tetraacyldisaccharide-1-P 4-Kinase From Chromobacterium Violaceum. Nesg Target CVR39.

All present enzymatic activity of Crystal Structure of the Putative Tetraacyldisaccharide-1-P 4-Kinase From Chromobacterium Violaceum. Nesg Target CVR39.:
2.7.1.130;

Protein crystallography data

The structure of Crystal Structure of the Putative Tetraacyldisaccharide-1-P 4-Kinase From Chromobacterium Violaceum. Nesg Target CVR39., PDB code: 2hf1 was solved by S.M.Vorobiev, M.Abashidze, J.Seetharaman, C.X.Chen, M.Jiang, K.Cunningham, L.C.Ma, R.Xiao, T.Acton, G.T.Montelione, J.F.Hunt, L.Tong, Northeaststructural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.41 / 1.90
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 27.517, 93.854, 87.219, 90.00, 90.00, 90.00
R / Rfree (%) 23.3 / 28.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Putative Tetraacyldisaccharide-1-P 4-Kinase From Chromobacterium Violaceum. Nesg Target CVR39. (pdb code 2hf1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Putative Tetraacyldisaccharide-1-P 4-Kinase From Chromobacterium Violaceum. Nesg Target CVR39., PDB code: 2hf1:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2hf1

Go back to Zinc Binding Sites List in 2hf1
Zinc binding site 1 out of 2 in the Crystal Structure of the Putative Tetraacyldisaccharide-1-P 4-Kinase From Chromobacterium Violaceum. Nesg Target CVR39.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Putative Tetraacyldisaccharide-1-P 4-Kinase From Chromobacterium Violaceum. Nesg Target CVR39. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn102

b:25.3
occ:1.00
SG A:CYS29 2.3 24.4 1.0
OD1 A:ASP32 2.3 30.1 1.0
SG A:CYS14 2.4 27.0 1.0
SG A:CYS11 2.4 22.6 1.0
CB A:CYS11 2.9 21.3 1.0
CG A:ASP32 3.1 32.9 1.0
CB A:CYS29 3.4 21.0 1.0
CB A:CYS14 3.5 29.7 1.0
CB A:ASP32 3.5 30.5 1.0
N A:CYS14 3.7 33.4 1.0
CA A:CYS14 4.2 31.3 1.0
OD2 A:ASP32 4.2 30.6 1.0
N A:ASP32 4.3 33.6 1.0
O A:HOH203 4.3 26.5 1.0
CA A:CYS11 4.4 21.0 1.0
CB A:LEU13 4.4 36.9 1.0
CA A:ASP32 4.5 30.7 1.0
CA A:CYS29 4.7 22.1 1.0
C A:LEU13 4.8 35.4 1.0
C A:CYS14 4.9 32.9 1.0
N A:LYS15 4.9 33.9 1.0
N A:LEU13 4.9 34.7 1.0
C A:CYS11 4.9 23.2 1.0
CA A:LEU13 4.9 35.3 1.0
N A:GLY16 5.0 27.9 1.0

Zinc binding site 2 out of 2 in 2hf1

Go back to Zinc Binding Sites List in 2hf1
Zinc binding site 2 out of 2 in the Crystal Structure of the Putative Tetraacyldisaccharide-1-P 4-Kinase From Chromobacterium Violaceum. Nesg Target CVR39.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Putative Tetraacyldisaccharide-1-P 4-Kinase From Chromobacterium Violaceum. Nesg Target CVR39. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn101

b:23.7
occ:1.00
OD2 B:ASP32 2.1 32.9 1.0
SG B:CYS14 2.3 21.1 1.0
SG B:CYS11 2.3 21.3 1.0
SG B:CYS29 2.3 20.6 1.0
CG B:ASP32 2.9 31.8 1.0
CB B:CYS11 2.9 19.0 1.0
CB B:CYS29 3.4 17.7 1.0
CB B:CYS14 3.4 26.0 1.0
CB B:ASP32 3.6 30.8 1.0
OD1 B:ASP32 3.7 35.1 1.0
N B:CYS14 3.7 27.9 1.0
CA B:CYS14 4.2 24.8 1.0
O B:HOH210 4.2 26.0 1.0
N B:ASP32 4.2 29.4 1.0
CB B:LEU13 4.2 34.8 1.0
O B:HOH226 4.3 30.1 1.0
CA B:CYS11 4.4 19.8 1.0
CA B:ASP32 4.5 31.0 1.0
C B:LEU13 4.8 30.1 1.0
CA B:CYS29 4.8 18.2 1.0
C B:CYS14 4.9 24.3 1.0
CA B:LEU13 4.9 31.7 1.0
C B:CYS11 4.9 21.4 1.0
N B:LEU13 4.9 29.0 1.0
N B:LYS15 4.9 23.1 1.0
N B:GLY16 5.0 20.4 1.0

Reference:

S.M.Vorobiev, M.Abashidze, J.Seetharaman, C.X.Chen, M.Jiang, K.Cunningham, L.C.Ma, R.Xiao, T.Acton, G.T.Montelione, J.F.Hunt, L.Tong. Crystal Structure of the Putative Tetraacyldisaccharide-1-P 4-Kinase From Chromobacterium Violaceum. To Be Published.
Page generated: Wed Dec 16 03:30:07 2020

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