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Zinc in PDB 2f8b: uc(Nmr) Structure of the C-Terminal Domain (Dimer) of HPV45 Oncoprotein E7

Zinc Binding Sites:

The binding sites of Zinc atom in the uc(Nmr) Structure of the C-Terminal Domain (Dimer) of HPV45 Oncoprotein E7 (pdb code 2f8b). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the uc(Nmr) Structure of the C-Terminal Domain (Dimer) of HPV45 Oncoprotein E7, PDB code: 2f8b:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2f8b

Go back to Zinc Binding Sites List in 2f8b
Zinc binding site 1 out of 2 in the uc(Nmr) Structure of the C-Terminal Domain (Dimer) of HPV45 Oncoprotein E7


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Structure of the C-Terminal Domain (Dimer) of HPV45 Oncoprotein E7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn57

b:0.0
occ:1.00
SG A:CYS16 1.3 0.0 1.0
CB A:CYS16 2.4 0.0 1.0
SG A:CYS19 2.5 0.0 1.0
SG A:CYS49 2.5 0.0 1.0
SG A:CYS52 2.5 0.0 1.0
HB2 A:CYS16 2.6 0.0 1.0
H A:CYS49 2.6 0.0 1.0
HB3 A:CYS16 2.7 0.0 1.0
HB3 A:CYS52 2.8 0.0 1.0
HG3 A:LYS18 3.1 0.0 1.0
CB A:CYS52 3.2 0.0 1.0
HG23 A:VAL48 3.4 0.0 1.0
N A:CYS49 3.5 0.0 1.0
HA A:VAL48 3.5 0.0 1.0
HD12 A:ILE23 3.6 0.0 1.0
HB2 A:CYS52 3.6 0.0 1.0
CA A:CYS16 3.7 0.0 1.0
H A:CYS19 3.7 0.0 1.0
HD2 A:LYS18 3.7 0.0 1.0
CB A:CYS49 3.9 0.0 1.0
HA A:CYS16 3.9 0.0 1.0
H A:LYS18 4.0 0.0 1.0
CG A:LYS18 4.1 0.0 1.0
CB A:CYS19 4.1 0.0 1.0
HG21 A:VAL48 4.1 0.0 1.0
HB3 A:CYS49 4.2 0.0 1.0
CG2 A:VAL48 4.2 0.0 1.0
CA A:CYS49 4.3 0.0 1.0
HG2 A:LYS18 4.3 0.0 1.0
C A:VAL48 4.3 0.0 1.0
C A:CYS16 4.3 0.0 1.0
CA A:VAL48 4.3 0.0 1.0
H A:CYS52 4.3 0.0 1.0
H A:GLY21 4.4 0.0 1.0
CD A:LYS18 4.4 0.0 1.0
HB3 A:CYS19 4.4 0.0 1.0
N A:CYS19 4.5 0.0 1.0
O A:CYS49 4.5 0.0 1.0
CA A:CYS52 4.6 0.0 1.0
CD1 A:ILE23 4.6 0.0 1.0
H A:CYS17 4.6 0.0 1.0
HG12 A:ILE23 4.6 0.0 1.0
N A:CYS17 4.7 0.0 1.0
HB2 A:CYS49 4.7 0.0 1.0
O A:CYS16 4.8 0.0 1.0
N A:CYS16 4.8 0.0 1.0
H A:CYS16 4.8 0.0 1.0
CB A:VAL48 4.8 0.0 1.0
N A:LYS18 4.8 0.0 1.0
HB2 A:CYS19 4.8 0.0 1.0
CA A:CYS19 4.9 0.0 1.0
HD11 A:ILE23 4.9 0.0 1.0
N A:CYS52 4.9 0.0 1.0
C A:CYS49 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 2f8b

Go back to Zinc Binding Sites List in 2f8b
Zinc binding site 2 out of 2 in the uc(Nmr) Structure of the C-Terminal Domain (Dimer) of HPV45 Oncoprotein E7


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Structure of the C-Terminal Domain (Dimer) of HPV45 Oncoprotein E7 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn57

b:0.0
occ:1.00
SG B:CYS16 1.4 0.0 1.0
CB B:CYS16 2.5 0.0 1.0
SG B:CYS19 2.5 0.0 1.0
SG B:CYS49 2.5 0.0 1.0
SG B:CYS52 2.5 0.0 1.0
HB2 B:CYS16 2.6 0.0 1.0
H B:CYS49 2.7 0.0 1.0
HB3 B:CYS16 2.9 0.0 1.0
H B:CYS19 3.1 0.0 1.0
HB3 B:CYS52 3.4 0.0 1.0
HD12 B:ILE23 3.4 0.0 1.0
HB2 B:CYS19 3.4 0.0 1.0
HA B:VAL48 3.5 0.0 1.0
CB B:CYS19 3.6 0.0 1.0
CB B:CYS52 3.6 0.0 1.0
N B:CYS49 3.6 0.0 1.0
HG2 B:LYS18 3.7 0.0 1.0
CA B:CYS16 3.7 0.0 1.0
HG3 B:LYS18 3.8 0.0 1.0
HA B:CYS16 3.8 0.0 1.0
H B:LYS18 3.9 0.0 1.0
N B:CYS19 3.9 0.0 1.0
CB B:CYS49 3.9 0.0 1.0
H B:CYS52 4.1 0.0 1.0
HB2 B:CYS52 4.2 0.0 1.0
HB3 B:CYS49 4.2 0.0 1.0
CG B:LYS18 4.3 0.0 1.0
CA B:CYS19 4.3 0.0 1.0
CA B:CYS49 4.4 0.0 1.0
CA B:VAL48 4.4 0.0 1.0
HG23 B:VAL48 4.4 0.0 1.0
C B:CYS16 4.4 0.0 1.0
C B:VAL48 4.4 0.0 1.0
CD1 B:ILE23 4.4 0.0 1.0
HB3 B:CYS19 4.4 0.0 1.0
H B:CYS17 4.6 0.0 1.0
O B:CYS49 4.6 0.0 1.0
HE3 B:TRP51 4.6 0.0 1.0
HG12 B:ILE23 4.7 0.0 1.0
HG12 B:VAL48 4.7 0.0 1.0
N B:CYS17 4.8 0.0 1.0
N B:LYS18 4.8 0.0 1.0
HB2 B:CYS49 4.8 0.0 1.0
CA B:CYS52 4.8 0.0 1.0
N B:CYS16 4.8 0.0 1.0
N B:CYS52 4.8 0.0 1.0
HD11 B:ILE23 4.8 0.0 1.0
C B:LYS18 4.9 0.0 1.0
H B:CYS16 4.9 0.0 1.0
O B:PHE47 4.9 0.0 1.0
O B:CYS16 5.0 0.0 1.0
HD2 B:LYS18 5.0 0.0 1.0
C B:CYS49 5.0 0.0 1.0

Reference:

O.Ohlenschlager, T.Seiboth, H.Zengerling, L.Briese, A.Marchanka, R.Ramachandran, M.Baum, M.Korbas, W.Meyer-Klaucke, M.Durst, M.Gorlach. Solution Structure of the Partially Folded High-Risk Human Papilloma Virus 45 Oncoprotein E7. Oncogene V. 25 5953 2006.
ISSN: ISSN 0950-9232
PubMed: 16636661
DOI: 10.1038/SJ.ONC.1209584
Page generated: Sat Sep 26 01:50:49 2020
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