Zinc in PDB 2f7r: Golgi Alpha-Mannosidase II Complex with Benzyl-Aminocyclopentitetrol

All present enzymatic activity of Golgi Alpha-Mannosidase II Complex with Benzyl-Aminocyclopentitetrol:
3.2.1.114;

The structure of Golgi Alpha-Mannosidase II Complex with Benzyl-Aminocyclopentitetrol, PDB code: 2f7r was solved by D.A.Kuntz, D.R.Rose, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.21 / 1.35
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	68.682, 109.143, 138.348, 90.00, 90.00, 90.00
R / Rfree (%)	16.4 / 18.6

The binding sites of Zinc atom in the Golgi Alpha-Mannosidase II Complex with Benzyl-Aminocyclopentitetrol (pdb code 2f7r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Golgi Alpha-Mannosidase II Complex with Benzyl-Aminocyclopentitetrol, PDB code: 2f7r:

Zinc binding site 1 out of 1 in the Golgi Alpha-Mannosidase II Complex with Benzyl-Aminocyclopentitetrol


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Golgi Alpha-Mannosidase II Complex with Benzyl-Aminocyclopentitetrol within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn5001 b:7.8 occ:1.00 NE2 A:HIS471 2.1 5.9 1.0 OD2 A:ASP204 2.1 7.9 1.0 NE2 A:HIS90 2.1 6.5 1.0 OD1 A:ASP92 2.1 8.6 1.0 O3 A:SK35009 2.2 7.6 1.0 O4 A:SK35009 2.2 7.5 1.0 CD2 A:HIS471 3.0 6.8 1.0 CD2 A:HIS90 3.1 7.8 1.0 CE1 A:HIS471 3.1 6.7 1.0 CE1 A:HIS90 3.1 7.2 1.0 CG A:ASP92 3.1 7.9 1.0 CG A:ASP204 3.1 7.8 1.0 C3 A:SK35009 3.1 7.9 1.0 C4 A:SK35009 3.2 7.7 1.0 OD2 A:ASP92 3.4 9.5 1.0 CB A:ASP204 3.6 6.5 1.0 OD2 A:ASP472 4.0 7.8 1.0 O1 A:SK35009 4.0 10.2 1.0 C5 A:SK35009 4.2 10.0 1.0 ND1 A:HIS471 4.2 6.4 1.0 CG A:HIS471 4.2 5.0 1.0 CG A:HIS90 4.2 6.3 1.0 OD1 A:ASP204 4.2 8.5 1.0 ND1 A:HIS90 4.2 6.9 1.0 C2 A:SK35009 4.3 9.1 1.0 N5 A:SK35009 4.4 12.6 1.0 C1 A:SK35009 4.4 9.4 1.0 CB A:ASP92 4.5 7.4 1.0 CE1 A:HIS470 4.5 5.2 1.0 OH A:TYR269 4.5 11.8 1.0 O A:HOH6049 4.6 9.6 1.0 O2 A:SK35009 4.8 8.8 1.0

S.P.Kawatkar, D.A.Kuntz, D.R.Rose, G.J.Boons. Golgi Alpha-Mannosidase II Complex with Benzyl-Aminocyclopentitetrol To Be Published.