Zinc in PDB 2d8y: Solution Structure of the Lim Domain of Epithelial Protein Lost in Neoplasm

The binding sites of Zinc atom in the Solution Structure of the Lim Domain of Epithelial Protein Lost in Neoplasm (pdb code 2d8y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Lim Domain of Epithelial Protein Lost in Neoplasm, PDB code: 2d8y:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Lim Domain of Epithelial Protein Lost in Neoplasm


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Lim Domain of Epithelial Protein Lost in Neoplasm within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 ND1 A:HIS39 2.1 0.0 1.0 SG A:CYS21 2.3 0.0 1.0 SG A:CYS42 2.3 0.0 1.0 SG A:CYS18 2.4 0.0 1.0 HB2 A:HIS39 2.6 0.0 1.0 CG A:HIS39 2.9 0.0 1.0 CE1 A:HIS39 3.1 0.0 1.0 H A:CYS21 3.1 0.0 1.0 CB A:CYS18 3.2 0.0 1.0 HB3 A:CYS18 3.2 0.0 1.0 HB2 A:CYS18 3.2 0.0 1.0 CB A:HIS39 3.2 0.0 1.0 HB2 A:GLU20 3.3 0.0 1.0 HE1 A:HIS39 3.4 0.0 1.0 HB2 A:CYS42 3.5 0.0 1.0 HB3 A:CYS21 3.5 0.0 1.0 CB A:CYS42 3.5 0.0 1.0 CB A:CYS21 3.5 0.0 1.0 HB3 A:HIS39 3.7 0.0 1.0 HZ2 A:LYS23 3.9 0.0 1.0 N A:CYS21 3.9 0.0 1.0 HB3 A:CYS42 3.9 0.0 1.0 H A:HIS39 4.0 0.0 1.0 CD2 A:HIS39 4.1 0.0 1.0 NE2 A:HIS39 4.1 0.0 1.0 HB2 A:LYS23 4.1 0.0 1.0 CA A:CYS21 4.3 0.0 1.0 HZ3 A:LYS23 4.3 0.0 1.0 HB2 A:CYS21 4.4 0.0 1.0 CB A:GLU20 4.4 0.0 1.0 H A:GLU20 4.4 0.0 1.0 H A:CYS42 4.5 0.0 1.0 CA A:HIS39 4.5 0.0 1.0 H A:LYS23 4.5 0.0 1.0 N A:HIS39 4.6 0.0 1.0 H A:GLN22 4.6 0.0 1.0 NZ A:LYS23 4.6 0.0 1.0 HD3 A:LYS23 4.6 0.0 1.0 HB3 A:GLU20 4.7 0.0 1.0 CA A:CYS18 4.7 0.0 1.0 CA A:CYS42 4.8 0.0 1.0 C A:GLU20 4.9 0.0 1.0 HG3 A:GLU20 4.9 0.0 1.0 HE2 A:HIS39 5.0 0.0 1.0 HG21 A:VAL25 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Lim Domain of Epithelial Protein Lost in Neoplasm


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Lim Domain of Epithelial Protein Lost in Neoplasm within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 ND1 A:HIS69 2.1 0.0 1.0 SG A:CYS48 2.3 0.0 1.0 SG A:CYS66 2.3 0.0 1.0 SG A:CYS45 2.4 0.0 1.0 HB3 A:TYR47 2.6 0.0 1.0 HB2 A:HIS69 2.9 0.0 1.0 H A:CYS48 2.9 0.0 1.0 CE1 A:HIS69 3.0 0.0 1.0 CG A:HIS69 3.1 0.0 1.0 HB3 A:CYS45 3.1 0.0 1.0 H A:CYS66 3.1 0.0 1.0 HE1 A:HIS69 3.2 0.0 1.0 CB A:CYS45 3.2 0.0 1.0 HB2 A:CYS45 3.4 0.0 1.0 HB3 A:CYS66 3.4 0.0 1.0 CB A:HIS69 3.5 0.0 1.0 CB A:CYS48 3.5 0.0 1.0 HB3 A:CYS48 3.5 0.0 1.0 CB A:CYS66 3.5 0.0 1.0 N A:CYS48 3.6 0.0 1.0 CB A:TYR47 3.7 0.0 1.0 H A:HIS69 3.9 0.0 1.0 N A:CYS66 4.0 0.0 1.0 HB3 A:HIS69 4.0 0.0 1.0 H A:TYR47 4.0 0.0 1.0 NE2 A:HIS69 4.1 0.0 1.0 HB2 A:TYR47 4.1 0.0 1.0 CD2 A:HIS69 4.1 0.0 1.0 CA A:CYS48 4.2 0.0 1.0 HB2 A:CYS66 4.4 0.0 1.0 CA A:CYS66 4.4 0.0 1.0 H A:ASN49 4.4 0.0 1.0 HB2 A:CYS48 4.4 0.0 1.0 C A:TYR47 4.4 0.0 1.0 CA A:TYR47 4.5 0.0 1.0 CG A:TYR47 4.5 0.0 1.0 HD1 A:TYR65 4.5 0.0 1.0 HD1 A:TYR47 4.5 0.0 1.0 HD21 A:ASN50 4.5 0.0 1.0 HA A:TYR65 4.6 0.0 1.0 HB2 A:PRO68 4.6 0.0 1.0 N A:TYR47 4.6 0.0 1.0 CA A:CYS45 4.7 0.0 1.0 N A:HIS69 4.7 0.0 1.0 CA A:HIS69 4.7 0.0 1.0 CD1 A:TYR47 4.8 0.0 1.0 O A:CYS66 4.8 0.0 1.0 HE2 A:HIS69 4.9 0.0 1.0 HA A:CYS48 5.0 0.0 1.0

X.R.Qin, T.Nagashima, F.Hayashi, S.Yokoyama. Solution Structure of the Lim Domain of Epithelial Protein Lost in Neoplasm To Be Published.