Zinc in PDB 2d8x: Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch)
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch)
(pdb code 2d8x). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch), PDB code: 2d8x:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 2d8x
Go back to
Zinc Binding Sites List in 2d8x
Zinc binding site 1 out
of 2 in the Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn201
b:0.0
occ:1.00
|
ND1
|
A:HIS28
|
2.1
|
0.0
|
1.0
|
SG
|
A:CYS31
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS11
|
2.4
|
0.0
|
1.0
|
SG
|
A:CYS8
|
2.4
|
0.0
|
1.0
|
H
|
A:CYS11
|
2.8
|
0.0
|
1.0
|
HB2
|
A:HIS28
|
2.8
|
0.0
|
1.0
|
CE1
|
A:HIS28
|
3.0
|
0.0
|
1.0
|
CG
|
A:HIS28
|
3.1
|
0.0
|
1.0
|
HB3
|
A:CYS8
|
3.1
|
0.0
|
1.0
|
HE1
|
A:HIS28
|
3.2
|
0.0
|
1.0
|
HB3
|
A:GLN10
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS8
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS31
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS8
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS31
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS11
|
3.4
|
0.0
|
1.0
|
CB
|
A:HIS28
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS11
|
3.5
|
0.0
|
1.0
|
H
|
A:HIS28
|
3.6
|
0.0
|
1.0
|
H
|
A:GLY12
|
3.7
|
0.0
|
1.0
|
HB3
|
A:CYS31
|
3.7
|
0.0
|
1.0
|
N
|
A:CYS11
|
3.7
|
0.0
|
1.0
|
NE2
|
A:HIS28
|
4.1
|
0.0
|
1.0
|
CD2
|
A:HIS28
|
4.2
|
0.0
|
1.0
|
CA
|
A:CYS11
|
4.2
|
0.0
|
1.0
|
HB3
|
A:HIS28
|
4.2
|
0.0
|
1.0
|
N
|
A:HIS28
|
4.2
|
0.0
|
1.0
|
CB
|
A:GLN10
|
4.2
|
0.0
|
1.0
|
HB2
|
A:GLU13
|
4.4
|
0.0
|
1.0
|
HB2
|
A:CYS11
|
4.4
|
0.0
|
1.0
|
HG2
|
A:GLN10
|
4.5
|
0.0
|
1.0
|
N
|
A:GLY12
|
4.5
|
0.0
|
1.0
|
CA
|
A:HIS28
|
4.5
|
0.0
|
1.0
|
HG3
|
A:GLN10
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS8
|
4.7
|
0.0
|
1.0
|
H
|
A:GLN10
|
4.7
|
0.0
|
1.0
|
CG
|
A:GLN10
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS31
|
4.7
|
0.0
|
1.0
|
H
|
A:CYS31
|
4.8
|
0.0
|
1.0
|
C
|
A:GLN10
|
4.8
|
0.0
|
1.0
|
H
|
A:GLU13
|
4.8
|
0.0
|
1.0
|
HA
|
A:TRP27
|
4.8
|
0.0
|
1.0
|
HB2
|
A:GLN10
|
4.9
|
0.0
|
1.0
|
C
|
A:CYS11
|
4.9
|
0.0
|
1.0
|
CA
|
A:GLN10
|
4.9
|
0.0
|
1.0
|
HG12
|
A:ILE15
|
5.0
|
0.0
|
1.0
|
HE2
|
A:HIS28
|
5.0
|
0.0
|
1.0
|
N
|
A:GLN10
|
5.0
|
0.0
|
1.0
|
O
|
A:GLU13
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 2d8x
Go back to
Zinc Binding Sites List in 2d8x
Zinc binding site 2 out
of 2 in the Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn401
b:0.0
occ:1.00
|
SG
|
A:CYS58
|
2.1
|
0.0
|
1.0
|
SG
|
A:CYS55
|
2.2
|
0.0
|
1.0
|
SG
|
A:CYS34
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS37
|
2.4
|
0.0
|
1.0
|
HB2
|
A:CYS58
|
2.8
|
0.0
|
1.0
|
H
|
A:CYS55
|
3.0
|
0.0
|
1.0
|
CB
|
A:CYS58
|
3.0
|
0.0
|
1.0
|
HB2
|
A:CYS34
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS34
|
3.2
|
0.0
|
1.0
|
H
|
A:CYS58
|
3.3
|
0.0
|
1.0
|
H
|
A:CYS37
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS37
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS34
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS37
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS55
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS55
|
3.5
|
0.0
|
1.0
|
HB2
|
A:LEU36
|
3.6
|
0.0
|
1.0
|
HB3
|
A:CYS58
|
3.7
|
0.0
|
1.0
|
N
|
A:CYS55
|
3.8
|
0.0
|
1.0
|
N
|
A:CYS37
|
3.9
|
0.0
|
1.0
|
HB3
|
A:GLU39
|
3.9
|
0.0
|
1.0
|
HB2
|
A:PRO57
|
4.0
|
0.0
|
1.0
|
N
|
A:CYS58
|
4.0
|
0.0
|
1.0
|
H
|
A:LEU36
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS58
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS55
|
4.2
|
0.0
|
1.0
|
CA
|
A:CYS37
|
4.3
|
0.0
|
1.0
|
HB2
|
A:CYS37
|
4.3
|
0.0
|
1.0
|
H
|
A:GLU39
|
4.4
|
0.0
|
1.0
|
HB2
|
A:CYS55
|
4.4
|
0.0
|
1.0
|
O
|
A:CYS55
|
4.4
|
0.0
|
1.0
|
HB3
|
A:LEU54
|
4.5
|
0.0
|
1.0
|
HA
|
A:LEU54
|
4.5
|
0.0
|
1.0
|
CB
|
A:LEU36
|
4.6
|
0.0
|
1.0
|
HD23
|
A:LEU41
|
4.6
|
0.0
|
1.0
|
H
|
A:GLN38
|
4.6
|
0.0
|
1.0
|
H
|
A:HIS59
|
4.6
|
0.0
|
1.0
|
HD11
|
A:LEU36
|
4.6
|
0.0
|
1.0
|
HA
|
A:CYS58
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS34
|
4.7
|
0.0
|
1.0
|
C
|
A:CYS55
|
4.7
|
0.0
|
1.0
|
C
|
A:LEU36
|
4.8
|
0.0
|
1.0
|
HD2
|
A:PRO57
|
4.8
|
0.0
|
1.0
|
HB2
|
A:GLU39
|
4.8
|
0.0
|
1.0
|
H
|
A:ASP35
|
4.8
|
0.0
|
1.0
|
CB
|
A:GLU39
|
4.9
|
0.0
|
1.0
|
HG2
|
A:PRO57
|
4.9
|
0.0
|
1.0
|
N
|
A:LEU36
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS34
|
4.9
|
0.0
|
1.0
|
C
|
A:LEU54
|
4.9
|
0.0
|
1.0
|
C
|
A:CYS37
|
4.9
|
0.0
|
1.0
|
HB3
|
A:LEU36
|
5.0
|
0.0
|
1.0
|
|
Reference:
X.R.Qin,
F.Hayashi,
S.Yokoyama.
Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch) To Be Published.
Page generated: Wed Oct 16 22:38:55 2024
|