Zinc in PDB 2d8x: Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch)

The binding sites of Zinc atom in the Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch) (pdb code 2d8x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch), PDB code: 2d8x:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 ND1 A:HIS28 2.1 0.0 1.0 SG A:CYS31 2.3 0.0 1.0 SG A:CYS11 2.4 0.0 1.0 SG A:CYS8 2.4 0.0 1.0 H A:CYS11 2.8 0.0 1.0 HB2 A:HIS28 2.8 0.0 1.0 CE1 A:HIS28 3.0 0.0 1.0 CG A:HIS28 3.1 0.0 1.0 HB3 A:CYS8 3.1 0.0 1.0 HE1 A:HIS28 3.2 0.0 1.0 HB3 A:GLN10 3.2 0.0 1.0 CB A:CYS8 3.2 0.0 1.0 HB2 A:CYS31 3.3 0.0 1.0 HB2 A:CYS8 3.3 0.0 1.0 CB A:CYS31 3.4 0.0 1.0 HB3 A:CYS11 3.4 0.0 1.0 CB A:HIS28 3.5 0.0 1.0 CB A:CYS11 3.5 0.0 1.0 H A:HIS28 3.6 0.0 1.0 H A:GLY12 3.7 0.0 1.0 HB3 A:CYS31 3.7 0.0 1.0 N A:CYS11 3.7 0.0 1.0 NE2 A:HIS28 4.1 0.0 1.0 CD2 A:HIS28 4.2 0.0 1.0 CA A:CYS11 4.2 0.0 1.0 HB3 A:HIS28 4.2 0.0 1.0 N A:HIS28 4.2 0.0 1.0 CB A:GLN10 4.2 0.0 1.0 HB2 A:GLU13 4.4 0.0 1.0 HB2 A:CYS11 4.4 0.0 1.0 HG2 A:GLN10 4.5 0.0 1.0 N A:GLY12 4.5 0.0 1.0 CA A:HIS28 4.5 0.0 1.0 HG3 A:GLN10 4.7 0.0 1.0 CA A:CYS8 4.7 0.0 1.0 H A:GLN10 4.7 0.0 1.0 CG A:GLN10 4.7 0.0 1.0 CA A:CYS31 4.7 0.0 1.0 H A:CYS31 4.8 0.0 1.0 C A:GLN10 4.8 0.0 1.0 H A:GLU13 4.8 0.0 1.0 HA A:TRP27 4.8 0.0 1.0 HB2 A:GLN10 4.9 0.0 1.0 C A:CYS11 4.9 0.0 1.0 CA A:GLN10 4.9 0.0 1.0 HG12 A:ILE15 5.0 0.0 1.0 HE2 A:HIS28 5.0 0.0 1.0 N A:GLN10 5.0 0.0 1.0 O A:GLU13 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 SG A:CYS58 2.1 0.0 1.0 SG A:CYS55 2.2 0.0 1.0 SG A:CYS34 2.3 0.0 1.0 SG A:CYS37 2.4 0.0 1.0 HB2 A:CYS58 2.8 0.0 1.0 H A:CYS55 3.0 0.0 1.0 CB A:CYS58 3.0 0.0 1.0 HB2 A:CYS34 3.2 0.0 1.0 CB A:CYS34 3.2 0.0 1.0 H A:CYS58 3.3 0.0 1.0 H A:CYS37 3.3 0.0 1.0 HB3 A:CYS37 3.3 0.0 1.0 HB3 A:CYS34 3.3 0.0 1.0 CB A:CYS37 3.5 0.0 1.0 CB A:CYS55 3.5 0.0 1.0 HB3 A:CYS55 3.5 0.0 1.0 HB2 A:LEU36 3.6 0.0 1.0 HB3 A:CYS58 3.7 0.0 1.0 N A:CYS55 3.8 0.0 1.0 N A:CYS37 3.9 0.0 1.0 HB3 A:GLU39 3.9 0.0 1.0 HB2 A:PRO57 4.0 0.0 1.0 N A:CYS58 4.0 0.0 1.0 H A:LEU36 4.1 0.0 1.0 CA A:CYS58 4.1 0.0 1.0 CA A:CYS55 4.2 0.0 1.0 CA A:CYS37 4.3 0.0 1.0 HB2 A:CYS37 4.3 0.0 1.0 H A:GLU39 4.4 0.0 1.0 HB2 A:CYS55 4.4 0.0 1.0 O A:CYS55 4.4 0.0 1.0 HB3 A:LEU54 4.5 0.0 1.0 HA A:LEU54 4.5 0.0 1.0 CB A:LEU36 4.6 0.0 1.0 HD23 A:LEU41 4.6 0.0 1.0 H A:GLN38 4.6 0.0 1.0 H A:HIS59 4.6 0.0 1.0 HD11 A:LEU36 4.6 0.0 1.0 HA A:CYS58 4.7 0.0 1.0 CA A:CYS34 4.7 0.0 1.0 C A:CYS55 4.7 0.0 1.0 C A:LEU36 4.8 0.0 1.0 HD2 A:PRO57 4.8 0.0 1.0 HB2 A:GLU39 4.8 0.0 1.0 H A:ASP35 4.8 0.0 1.0 CB A:GLU39 4.9 0.0 1.0 HG2 A:PRO57 4.9 0.0 1.0 N A:LEU36 4.9 0.0 1.0 HA A:CYS34 4.9 0.0 1.0 C A:LEU54 4.9 0.0 1.0 C A:CYS37 4.9 0.0 1.0 HB3 A:LEU36 5.0 0.0 1.0

X.R.Qin, F.Hayashi, S.Yokoyama. Solution Structure of the Second Lim Domain of Particularly Interesting New Cys-His Protein (Pinch) To Be Published.