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Zinc in PDB 2d8u: Solution Structure of the B-Box Domain of the Human Tripartite Motif-Containing 63 Protein

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the B-Box Domain of the Human Tripartite Motif-Containing 63 Protein (pdb code 2d8u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the B-Box Domain of the Human Tripartite Motif-Containing 63 Protein, PDB code: 2d8u:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2d8u

Go back to Zinc Binding Sites List in 2d8u
Zinc binding site 1 out of 2 in the Solution Structure of the B-Box Domain of the Human Tripartite Motif-Containing 63 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the B-Box Domain of the Human Tripartite Motif-Containing 63 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
SG A:CYS11 2.3 0.0 1.0
SG A:CYS31 2.3 0.0 1.0
SG A:CYS34 2.3 0.0 1.0
ND1 A:HIS14 2.3 0.0 1.0
HE1 A:HIS14 2.7 0.0 1.0
CE1 A:HIS14 2.8 0.0 1.0
HB3 A:GLU13 3.0 0.0 1.0
OE1 A:GLU17 3.3 0.0 1.0
HB2 A:CYS34 3.4 0.0 1.0
HB3 A:CYS31 3.4 0.0 1.0
H A:HIS14 3.4 0.0 1.0
H A:CYS31 3.4 0.0 1.0
CB A:CYS31 3.5 0.0 1.0
CB A:CYS11 3.5 0.0 1.0
CB A:CYS34 3.5 0.0 1.0
HB3 A:CYS11 3.6 0.0 1.0
CG A:HIS14 3.6 0.0 1.0
HB2 A:CYS11 3.7 0.0 1.0
HB2 A:HIS14 3.8 0.0 1.0
H A:CYS34 3.8 0.0 1.0
HG1 A:THR30 3.8 0.0 1.0
OG1 A:THR30 4.0 0.0 1.0
CB A:GLU13 4.0 0.0 1.0
NE2 A:HIS14 4.1 0.0 1.0
N A:CYS31 4.2 0.0 1.0
N A:HIS14 4.2 0.0 1.0
CB A:HIS14 4.2 0.0 1.0
HB3 A:CYS34 4.3 0.0 1.0
N A:CYS34 4.3 0.0 1.0
HB2 A:GLU13 4.3 0.0 1.0
HB2 A:CYS31 4.3 0.0 1.0
HG2 A:GLU13 4.4 0.0 1.0
CA A:CYS31 4.4 0.0 1.0
HB2 A:MET33 4.4 0.0 1.0
CA A:CYS34 4.5 0.0 1.0
CD2 A:HIS14 4.5 0.0 1.0
H A:GLU13 4.5 0.0 1.0
CD A:GLU17 4.5 0.0 1.0
CG A:GLU13 4.8 0.0 1.0
HA A:CYS34 4.8 0.0 1.0
HE2 A:HIS14 4.9 0.0 1.0
CA A:HIS14 4.9 0.0 1.0
CA A:CYS11 4.9 0.0 1.0
CA A:GLU13 4.9 0.0 1.0
HB3 A:GLU17 4.9 0.0 1.0
C A:CYS31 4.9 0.0 1.0
N A:GLU13 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2d8u

Go back to Zinc Binding Sites List in 2d8u
Zinc binding site 2 out of 2 in the Solution Structure of the B-Box Domain of the Human Tripartite Motif-Containing 63 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the B-Box Domain of the Human Tripartite Motif-Containing 63 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS26 2.3 0.0 1.0
SG A:CYS23 2.3 0.0 1.0
ND1 A:HIS40 2.3 0.0 1.0
SG A:CYS43 2.4 0.0 1.0
HE1 A:HIS40 2.8 0.0 1.0
CE1 A:HIS40 2.9 0.0 1.0
HB3 A:CYS43 3.1 0.0 1.0
CB A:CYS43 3.2 0.0 1.0
H A:CYS26 3.2 0.0 1.0
HB2 A:CYS43 3.4 0.0 1.0
HB3 A:CYS26 3.4 0.0 1.0
CB A:CYS26 3.5 0.0 1.0
CB A:CYS23 3.6 0.0 1.0
CG A:HIS40 3.6 0.0 1.0
HB3 A:CYS23 3.7 0.0 1.0
HB2 A:CYS23 3.7 0.0 1.0
HB3 A:HIS40 3.7 0.0 1.0
HB A:THR25 3.7 0.0 1.0
HG22 A:VAL28 3.8 0.0 1.0
N A:CYS26 4.1 0.0 1.0
HA A:HIS40 4.2 0.0 1.0
CB A:HIS40 4.2 0.0 1.0
NE2 A:HIS40 4.2 0.0 1.0
HB2 A:CYS26 4.3 0.0 1.0
HG23 A:THR30 4.4 0.0 1.0
CA A:CYS26 4.5 0.0 1.0
CD2 A:HIS40 4.5 0.0 1.0
CA A:CYS43 4.7 0.0 1.0
HG21 A:VAL28 4.7 0.0 1.0
CG2 A:VAL28 4.7 0.0 1.0
H A:GLU27 4.7 0.0 1.0
CA A:HIS40 4.7 0.0 1.0
HG13 A:VAL28 4.8 0.0 1.0
CB A:THR25 4.8 0.0 1.0
H A:GLU44 4.9 0.0 1.0
HA A:CYS43 4.9 0.0 1.0
CA A:CYS23 4.9 0.0 1.0
HE2 A:HIS40 5.0 0.0 1.0
H A:VAL28 5.0 0.0 1.0
HG23 A:THR25 5.0 0.0 1.0

Reference:

K.Miyamoto, T.Kigawa, T.Tomizawa, S.Koshiba, M.Inoue, S.Yokoyama. Solution Structure of the B-Box Domain of the Human Tripartite Motif-Containing 63 Protein To Be Published.
Page generated: Wed Dec 16 03:20:41 2020

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