Zinc in PDB 2d8s: Solution Structure of the Ring Domain of the Human Cellular Modulator of Immune Recognition Protein
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution Structure of the Ring Domain of the Human Cellular Modulator of Immune Recognition Protein
(pdb code 2d8s). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Solution Structure of the Ring Domain of the Human Cellular Modulator of Immune Recognition Protein, PDB code: 2d8s:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 2d8s
Go back to
Zinc Binding Sites List in 2d8s
Zinc binding site 1 out
of 2 in the Solution Structure of the Ring Domain of the Human Cellular Modulator of Immune Recognition Protein
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution Structure of the Ring Domain of the Human Cellular Modulator of Immune Recognition Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn201
b:0.0
occ:1.00
|
SG
|
A:CYS48
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS21
|
2.3
|
0.0
|
1.0
|
ND1
|
A:HIS45
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS18
|
2.4
|
0.0
|
1.0
|
HB2
|
A:HIS45
|
2.6
|
0.0
|
1.0
|
CG
|
A:HIS45
|
2.9
|
0.0
|
1.0
|
HB3
|
A:CYS21
|
3.0
|
0.0
|
1.0
|
HB2
|
A:CYS18
|
3.1
|
0.0
|
1.0
|
CE1
|
A:HIS45
|
3.1
|
0.0
|
1.0
|
CB
|
A:CYS18
|
3.2
|
0.0
|
1.0
|
H
|
A:CYS21
|
3.3
|
0.0
|
1.0
|
CB
|
A:HIS45
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS21
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS48
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS18
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS48
|
3.5
|
0.0
|
1.0
|
H
|
A:HIS45
|
3.5
|
0.0
|
1.0
|
HE1
|
A:HIS45
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS48
|
3.8
|
0.0
|
1.0
|
CD2
|
A:HIS45
|
3.9
|
0.0
|
1.0
|
NE2
|
A:HIS45
|
4.0
|
0.0
|
1.0
|
HB3
|
A:HIS45
|
4.0
|
0.0
|
1.0
|
N
|
A:CYS21
|
4.0
|
0.0
|
1.0
|
HB
|
A:ILE20
|
4.0
|
0.0
|
1.0
|
HB2
|
A:CYS21
|
4.1
|
0.0
|
1.0
|
HB2
|
A:CYS23
|
4.2
|
0.0
|
1.0
|
N
|
A:HIS45
|
4.2
|
0.0
|
1.0
|
CA
|
A:CYS21
|
4.2
|
0.0
|
1.0
|
H
|
A:HIS22
|
4.3
|
0.0
|
1.0
|
H
|
A:CYS23
|
4.4
|
0.0
|
1.0
|
CA
|
A:HIS45
|
4.4
|
0.0
|
1.0
|
H
|
A:CYS48
|
4.6
|
0.0
|
1.0
|
H
|
A:ILE20
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS18
|
4.7
|
0.0
|
1.0
|
HE2
|
A:HIS45
|
4.8
|
0.0
|
1.0
|
HD2
|
A:HIS45
|
4.8
|
0.0
|
1.0
|
CA
|
A:CYS48
|
4.8
|
0.0
|
1.0
|
N
|
A:HIS22
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS18
|
4.9
|
0.0
|
1.0
|
HG
|
A:SER29
|
4.9
|
0.0
|
1.0
|
C
|
A:CYS21
|
4.9
|
0.0
|
1.0
|
HD13
|
A:ILE20
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 2d8s
Go back to
Zinc Binding Sites List in 2d8s
Zinc binding site 2 out
of 2 in the Solution Structure of the Ring Domain of the Human Cellular Modulator of Immune Recognition Protein
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution Structure of the Ring Domain of the Human Cellular Modulator of Immune Recognition Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn401
b:0.0
occ:1.00
|
SG
|
A:CYS35
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS37
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS64
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS61
|
2.4
|
0.0
|
1.0
|
HB2
|
A:CYS37
|
3.0
|
0.0
|
1.0
|
HB2
|
A:CYS61
|
3.1
|
0.0
|
1.0
|
HD2
|
A:HIS36
|
3.1
|
0.0
|
1.0
|
H
|
A:CYS37
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS35
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS61
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS37
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS64
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS35
|
3.4
|
0.0
|
1.0
|
H
|
A:CYS64
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS64
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS61
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS35
|
3.8
|
0.0
|
1.0
|
CD2
|
A:HIS36
|
3.8
|
0.0
|
1.0
|
NE2
|
A:HIS42
|
3.9
|
0.0
|
1.0
|
HE1
|
A:HIS42
|
3.9
|
0.0
|
1.0
|
N
|
A:CYS37
|
4.0
|
0.0
|
1.0
|
CE1
|
A:HIS42
|
4.1
|
0.0
|
1.0
|
HB3
|
A:CYS37
|
4.1
|
0.0
|
1.0
|
HB3
|
A:TYR66
|
4.2
|
0.0
|
1.0
|
NE2
|
A:HIS36
|
4.2
|
0.0
|
1.0
|
HE1
|
A:PHE68
|
4.2
|
0.0
|
1.0
|
CA
|
A:CYS37
|
4.3
|
0.0
|
1.0
|
HB2
|
A:CYS64
|
4.3
|
0.0
|
1.0
|
N
|
A:CYS64
|
4.3
|
0.0
|
1.0
|
H
|
A:HIS36
|
4.3
|
0.0
|
1.0
|
H
|
A:TYR66
|
4.5
|
0.0
|
1.0
|
CA
|
A:CYS64
|
4.5
|
0.0
|
1.0
|
HB2
|
A:LEU63
|
4.5
|
0.0
|
1.0
|
H
|
A:LEU63
|
4.6
|
0.0
|
1.0
|
N
|
A:HIS36
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS61
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS35
|
4.7
|
0.0
|
1.0
|
HA
|
A:CYS37
|
4.8
|
0.0
|
1.0
|
HD11
|
A:LEU63
|
4.8
|
0.0
|
1.0
|
CD2
|
A:HIS42
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS61
|
4.8
|
0.0
|
1.0
|
H
|
A:LYS65
|
4.8
|
0.0
|
1.0
|
H
|
A:GLU62
|
4.9
|
0.0
|
1.0
|
C
|
A:CYS35
|
4.9
|
0.0
|
1.0
|
CG
|
A:HIS36
|
4.9
|
0.0
|
1.0
|
|
Reference:
K.Miyamoto,
T.Kigawa,
T.Tomizawa,
S.Koshiba,
M.Inoue,
S.Yokoyama.
Solution Structure of the Ring Domain of the Human Cellular Modulator of Immune Recognition Protein To Be Published.
Page generated: Wed Oct 16 22:38:08 2024
|