Zinc in PDB 2d54: Crystal Structure of Methionyl Trna Synthetase Y225A Mutant From Thermus Thermophilus

All present enzymatic activity of Crystal Structure of Methionyl Trna Synthetase Y225A Mutant From Thermus Thermophilus:
6.1.1.10;

The structure of Crystal Structure of Methionyl Trna Synthetase Y225A Mutant From Thermus Thermophilus, PDB code: 2d54 was solved by M.Konno, R.Takeda, R.Takasaka, Y.Mori, R.Ishii, S.Yokoyama, Rikenstructural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.318, 82.209, 120.560, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 25.4

The binding sites of Zinc atom in the Crystal Structure of Methionyl Trna Synthetase Y225A Mutant From Thermus Thermophilus (pdb code 2d54). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Methionyl Trna Synthetase Y225A Mutant From Thermus Thermophilus, PDB code: 2d54:

Zinc binding site 1 out of 1 in the Crystal Structure of Methionyl Trna Synthetase Y225A Mutant From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Methionyl Trna Synthetase Y225A Mutant From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1501 b:20.1 occ:1.00 ND1 A:HIS147 2.1 23.6 1.0 SG A:CYS130 2.3 27.0 1.0 SG A:CYS127 2.3 19.6 1.0 SG A:CYS144 2.3 22.9 1.0 CE1 A:HIS147 2.9 21.9 1.0 CG A:HIS147 3.2 24.7 1.0 CB A:CYS130 3.3 24.0 1.0 CB A:CYS127 3.3 17.7 1.0 CB A:CYS144 3.4 25.8 1.0 N A:CYS130 3.6 24.7 1.0 CB A:HIS147 3.7 26.0 1.0 CA A:CYS130 3.9 24.8 1.0 N A:HIS147 4.0 27.6 1.0 NE2 A:HIS147 4.1 20.6 1.0 CB A:ILE146 4.2 27.1 1.0 CD2 A:HIS147 4.3 22.8 1.0 CB A:SER129 4.3 21.8 1.0 CE1 A:TYR134 4.4 26.2 1.0 C A:SER129 4.4 24.7 1.0 OH A:TYR134 4.5 27.2 1.0 CA A:HIS147 4.5 26.6 1.0 CA A:CYS127 4.7 19.5 1.0 CG2 A:ILE146 4.7 25.3 1.0 CA A:CYS144 4.8 27.2 1.0 CA A:SER129 4.8 22.9 1.0 CZ A:TYR134 4.9 27.0 1.0 C A:ILE146 4.9 27.5 1.0 CA A:ILE146 4.9 26.8 1.0 N A:SER129 5.0 21.8 1.0 N A:ILE146 5.0 27.1 1.0 CG1 A:ILE146 5.0 27.6 1.0 O A:CYS127 5.0 19.8 1.0 OG A:SER129 5.0 23.0 1.0

M.Konno, R.Takeda, R.Takasaka, Y.Mori, R.Ishii, S.Yokoyama. Y225F/Amutation For Met-Trna Synthetase Reveals Importance of Hydrophobic Circumstance To Be Published.