Zinc in PDB 2ct1: Solution Structure of the Zinc Finger Domain of Transcriptional Repressor Ctcf Protein

The binding sites of Zinc atom in the Solution Structure of the Zinc Finger Domain of Transcriptional Repressor Ctcf Protein (pdb code 2ct1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Zinc Finger Domain of Transcriptional Repressor Ctcf Protein, PDB code: 2ct1:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Zinc Finger Domain of Transcriptional Repressor Ctcf Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Zinc Finger Domain of Transcriptional Repressor Ctcf Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 NE2 A:HIS34 2.3 0.0 1.0 NE2 A:HIS39 2.3 0.0 1.0 SG A:CYS21 2.3 0.0 1.0 SG A:CYS18 2.3 0.0 1.0 HD2 A:HIS34 2.7 0.0 1.0 HD2 A:HIS39 2.8 0.0 1.0 CD2 A:HIS34 2.9 0.0 1.0 CD2 A:HIS39 2.9 0.0 1.0 HB A:ILE20 3.0 0.0 1.0 H A:CYS21 3.0 0.0 1.0 HB3 A:CYS18 3.2 0.0 1.0 HB3 A:CYS21 3.2 0.0 1.0 CB A:CYS18 3.2 0.0 1.0 CB A:CYS21 3.3 0.0 1.0 HB2 A:CYS18 3.4 0.0 1.0 CE1 A:HIS39 3.5 0.0 1.0 CE1 A:HIS34 3.6 0.0 1.0 HB1 A:ALA23 3.6 0.0 1.0 N A:CYS21 3.6 0.0 1.0 HE1 A:HIS39 4.0 0.0 1.0 HB2 A:LYS38 4.0 0.0 1.0 HE1 A:HIS34 4.0 0.0 1.0 CB A:ILE20 4.0 0.0 1.0 HG12 A:ILE35 4.1 0.0 1.0 CA A:CYS21 4.1 0.0 1.0 HA A:ILE35 4.1 0.0 1.0 HD11 A:ILE20 4.1 0.0 1.0 H A:ALA23 4.1 0.0 1.0 CG A:HIS34 4.1 0.0 1.0 H A:ILE20 4.2 0.0 1.0 CG A:HIS39 4.2 0.0 1.0 HB2 A:CYS21 4.2 0.0 1.0 HG21 A:ILE20 4.2 0.0 1.0 HE2 A:PHE25 4.4 0.0 1.0 ND1 A:HIS34 4.4 0.0 1.0 ND1 A:HIS39 4.5 0.0 1.0 C A:ILE20 4.5 0.0 1.0 H A:HIS22 4.5 0.0 1.0 CB A:ALA23 4.5 0.0 1.0 HB3 A:ALA23 4.6 0.0 1.0 CG2 A:ILE20 4.6 0.0 1.0 CA A:ILE20 4.7 0.0 1.0 CA A:CYS18 4.7 0.0 1.0 HG23 A:ILE20 4.7 0.0 1.0 HG3 A:LYS38 4.8 0.0 1.0 N A:ILE20 4.8 0.0 1.0 C A:CYS21 4.9 0.0 1.0 HA A:CYS21 4.9 0.0 1.0 CG1 A:ILE20 4.9 0.0 1.0 CB A:LYS38 4.9 0.0 1.0 HZ A:PHE25 4.9 0.0 1.0 CD1 A:ILE20 4.9 0.0 1.0 N A:HIS22 4.9 0.0 1.0 HB3 A:LYS38 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Zinc Finger Domain of Transcriptional Repressor Ctcf Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Zinc Finger Domain of Transcriptional Repressor Ctcf Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 NE2 A:HIS64 2.3 0.0 1.0 SG A:CYS51 2.3 0.0 1.0 NE2 A:HIS69 2.3 0.0 1.0 SG A:CYS48 2.3 0.0 1.0 H A:CYS51 2.7 0.0 1.0 HD2 A:HIS69 3.0 0.0 1.0 CD2 A:HIS69 3.0 0.0 1.0 HB2 A:HIS50 3.1 0.0 1.0 CE1 A:HIS64 3.1 0.0 1.0 HE1 A:HIS64 3.2 0.0 1.0 CB A:CYS48 3.3 0.0 1.0 HB3 A:CYS48 3.4 0.0 1.0 HB3 A:CYS51 3.4 0.0 1.0 CB A:CYS51 3.4 0.0 1.0 HB2 A:CYS48 3.4 0.0 1.0 CD2 A:HIS64 3.4 0.0 1.0 CE1 A:HIS69 3.5 0.0 1.0 N A:CYS51 3.5 0.0 1.0 HD2 A:HIS64 3.7 0.0 1.0 HD2 A:HIS50 3.8 0.0 1.0 HE1 A:HIS69 3.9 0.0 1.0 CA A:CYS51 4.0 0.0 1.0 HB A:THR53 4.0 0.0 1.0 CB A:HIS50 4.2 0.0 1.0 CG A:HIS69 4.3 0.0 1.0 H A:HIS50 4.3 0.0 1.0 ND1 A:HIS64 4.3 0.0 1.0 O A:CYS51 4.4 0.0 1.0 HB2 A:CYS51 4.4 0.0 1.0 HB3 A:GLN68 4.4 0.0 1.0 C A:CYS51 4.4 0.0 1.0 ND1 A:HIS69 4.5 0.0 1.0 CG A:HIS64 4.5 0.0 1.0 CD2 A:HIS50 4.6 0.0 1.0 HG1 A:THR53 4.6 0.0 1.0 C A:HIS50 4.6 0.0 1.0 HB2 A:GLN68 4.7 0.0 1.0 HB3 A:HIS50 4.7 0.0 1.0 OG1 A:THR53 4.7 0.0 1.0 CA A:CYS48 4.8 0.0 1.0 CG A:HIS50 4.8 0.0 1.0 CA A:HIS50 4.8 0.0 1.0 CB A:THR53 4.9 0.0 1.0 HD21 A:LEU65 4.9 0.0 1.0 N A:HIS50 4.9 0.0 1.0 HA A:CYS51 5.0 0.0 1.0 HG3 A:GLN68 5.0 0.0 1.0

K.Miyamoto, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama. Solution Structure of the Zinc Finger Domain of Transcriptional Repressor Ctcf Protein To Be Published.