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Zinc in PDB 2csv: Solution Structure of the Zf-B_BOX TYPE2 Domain of Human Tripartite Motif Protein TRIM29 Isoform Alpha

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Zf-B_BOX TYPE2 Domain of Human Tripartite Motif Protein TRIM29 Isoform Alpha (pdb code 2csv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Zf-B_BOX TYPE2 Domain of Human Tripartite Motif Protein TRIM29 Isoform Alpha, PDB code: 2csv:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2csv

Go back to Zinc Binding Sites List in 2csv
Zinc binding site 1 out of 2 in the Solution Structure of the Zf-B_BOX TYPE2 Domain of Human Tripartite Motif Protein TRIM29 Isoform Alpha


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Zf-B_BOX TYPE2 Domain of Human Tripartite Motif Protein TRIM29 Isoform Alpha within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn200

b:0.0
occ:1.00
ND1 A:HIS24 2.0 0.0 1.0
SG A:CYS43 2.3 0.0 1.0
SG A:CYS21 2.3 0.0 1.0
SG A:CYS40 2.3 0.0 1.0
CE1 A:HIS24 2.9 0.0 1.0
HB2 A:HIS24 3.0 0.0 1.0
HE1 A:HIS24 3.0 0.0 1.0
CG A:HIS24 3.1 0.0 1.0
HB2 A:CYS21 3.2 0.0 1.0
CB A:CYS21 3.2 0.0 1.0
HB3 A:CYS21 3.3 0.0 1.0
HB A:VAL23 3.5 0.0 1.0
H A:CYS40 3.5 0.0 1.0
CB A:CYS43 3.5 0.0 1.0
HB2 A:CYS43 3.5 0.0 1.0
CB A:HIS24 3.6 0.0 1.0
H A:HIS24 3.6 0.0 1.0
HB2 A:LEU42 3.7 0.0 1.0
CB A:CYS40 3.9 0.0 1.0
H A:CYS43 3.9 0.0 1.0
N A:CYS43 4.0 0.0 1.0
HB3 A:CYS40 4.0 0.0 1.0
HA A:CYS43 4.0 0.0 1.0
NE2 A:HIS24 4.0 0.0 1.0
CA A:CYS43 4.1 0.0 1.0
OE2 A:GLU47 4.1 0.0 1.0
N A:HIS24 4.1 0.0 1.0
CD2 A:HIS24 4.2 0.0 1.0
N A:CYS40 4.4 0.0 1.0
HB3 A:HIS24 4.4 0.0 1.0
HB3 A:CYS43 4.4 0.0 1.0
H A:VAL23 4.5 0.0 1.0
CA A:HIS24 4.5 0.0 1.0
HG3 A:GLU47 4.5 0.0 1.0
HG12 A:VAL23 4.5 0.0 1.0
CB A:VAL23 4.6 0.0 1.0
C A:LEU42 4.6 0.0 1.0
CD A:GLU47 4.6 0.0 1.0
HB2 A:CYS40 4.6 0.0 1.0
CA A:CYS40 4.7 0.0 1.0
H A:GLY25 4.7 0.0 1.0
CA A:CYS21 4.7 0.0 1.0
CB A:LEU42 4.7 0.0 1.0
HB A:ILE39 4.9 0.0 1.0
HE2 A:HIS24 4.9 0.0 1.0
HB2 A:GLU47 4.9 0.0 1.0
HB3 A:LEU42 4.9 0.0 1.0
C A:VAL23 4.9 0.0 1.0
HA A:CYS21 5.0 0.0 1.0
H A:LEU42 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2csv

Go back to Zinc Binding Sites List in 2csv
Zinc binding site 2 out of 2 in the Solution Structure of the Zf-B_BOX TYPE2 Domain of Human Tripartite Motif Protein TRIM29 Isoform Alpha


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Zf-B_BOX TYPE2 Domain of Human Tripartite Motif Protein TRIM29 Isoform Alpha within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:0.0
occ:1.00
ND1 A:HIS51 2.0 0.0 1.0
ND1 A:HIS48 2.1 0.0 1.0
OD2 A:ASP35 2.3 0.0 1.0
SG A:CYS32 2.3 0.0 1.0
CE1 A:HIS48 2.8 0.0 1.0
HE1 A:HIS48 2.9 0.0 1.0
CE1 A:HIS51 3.0 0.0 1.0
CG A:ASP35 3.0 0.0 1.0
OD1 A:ASP35 3.0 0.0 1.0
HB A:THR34 3.0 0.0 1.0
CG A:HIS51 3.1 0.0 1.0
HB3 A:HIS48 3.1 0.0 1.0
HE1 A:HIS51 3.2 0.0 1.0
CG A:HIS48 3.2 0.0 1.0
HB2 A:HIS51 3.3 0.0 1.0
HB3 A:HIS51 3.4 0.0 1.0
H A:ASP35 3.5 0.0 1.0
CB A:HIS51 3.5 0.0 1.0
CB A:CYS32 3.6 0.0 1.0
HB2 A:CYS32 3.6 0.0 1.0
CB A:HIS48 3.7 0.0 1.0
HB3 A:CYS32 3.8 0.0 1.0
NE2 A:HIS48 4.0 0.0 1.0
CB A:THR34 4.0 0.0 1.0
NE2 A:HIS51 4.1 0.0 1.0
CD2 A:HIS51 4.2 0.0 1.0
CD2 A:HIS48 4.2 0.0 1.0
N A:ASP35 4.3 0.0 1.0
H A:THR34 4.3 0.0 1.0
HA A:HIS48 4.3 0.0 1.0
CB A:ASP35 4.3 0.0 1.0
HG21 A:THR34 4.4 0.0 1.0
HG21 A:THR37 4.4 0.0 1.0
HB2 A:HIS48 4.5 0.0 1.0
HG22 A:THR34 4.5 0.0 1.0
CG2 A:THR34 4.6 0.0 1.0
HB3 A:ASP35 4.6 0.0 1.0
CA A:HIS48 4.7 0.0 1.0
OG1 A:THR34 4.7 0.0 1.0
HG22 A:ILE39 4.8 0.0 1.0
HD12 A:ILE39 4.9 0.0 1.0
HE2 A:HIS48 4.9 0.0 1.0
CA A:THR34 4.9 0.0 1.0
CA A:CYS32 4.9 0.0 1.0
HE2 A:HIS51 4.9 0.0 1.0
N A:THR34 5.0 0.0 1.0
CA A:ASP35 5.0 0.0 1.0

Reference:

K.Inoue, F.Hayashi, S.Yokoyama. Solution Structure of the Zf-B_BOX TYPE2 Domain of Human Tripartite Motif Protein TRIM29 Isoform Alpha To Be Published.
Page generated: Wed Oct 16 22:30:18 2024

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