Zinc in PDB 2cor: Solution Structure of the Third Lim Domain of Particularly Interesting New Cys-His Protein
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution Structure of the Third Lim Domain of Particularly Interesting New Cys-His Protein
(pdb code 2cor). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Solution Structure of the Third Lim Domain of Particularly Interesting New Cys-His Protein, PDB code: 2cor:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 2cor
Go back to
Zinc Binding Sites List in 2cor
Zinc binding site 1 out
of 2 in the Solution Structure of the Third Lim Domain of Particularly Interesting New Cys-His Protein
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution Structure of the Third Lim Domain of Particularly Interesting New Cys-His Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn201
b:0.0
occ:1.00
|
NE2
|
A:HIS41
|
2.1
|
0.0
|
1.0
|
ND1
|
A:HIS38
|
2.1
|
0.0
|
1.0
|
SG
|
A:CYS18
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS21
|
2.4
|
0.0
|
1.0
|
CD2
|
A:HIS41
|
2.6
|
0.0
|
1.0
|
HD2
|
A:HIS41
|
2.6
|
0.0
|
1.0
|
HB2
|
A:HIS38
|
2.7
|
0.0
|
1.0
|
H
|
A:CYS21
|
3.0
|
0.0
|
1.0
|
CE1
|
A:HIS38
|
3.0
|
0.0
|
1.0
|
CG
|
A:HIS38
|
3.0
|
0.0
|
1.0
|
HB3
|
A:CYS21
|
3.1
|
0.0
|
1.0
|
HB3
|
A:CYS18
|
3.1
|
0.0
|
1.0
|
HB3
|
A:LYS20
|
3.1
|
0.0
|
1.0
|
CE1
|
A:HIS41
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS18
|
3.2
|
0.0
|
1.0
|
HE1
|
A:HIS38
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS21
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS18
|
3.3
|
0.0
|
1.0
|
CB
|
A:HIS38
|
3.4
|
0.0
|
1.0
|
H
|
A:HIS38
|
3.5
|
0.0
|
1.0
|
N
|
A:CYS21
|
3.7
|
0.0
|
1.0
|
HE1
|
A:HIS41
|
3.7
|
0.0
|
1.0
|
CG
|
A:HIS41
|
3.8
|
0.0
|
1.0
|
ND1
|
A:HIS41
|
4.1
|
0.0
|
1.0
|
NE2
|
A:HIS38
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS21
|
4.1
|
0.0
|
1.0
|
HB3
|
A:HIS38
|
4.1
|
0.0
|
1.0
|
CD2
|
A:HIS38
|
4.1
|
0.0
|
1.0
|
N
|
A:HIS38
|
4.1
|
0.0
|
1.0
|
CB
|
A:LYS20
|
4.2
|
0.0
|
1.0
|
HB2
|
A:CYS21
|
4.2
|
0.0
|
1.0
|
HG2
|
A:LYS20
|
4.2
|
0.0
|
1.0
|
H
|
A:LYS20
|
4.3
|
0.0
|
1.0
|
HB1
|
A:ALA23
|
4.4
|
0.0
|
1.0
|
CA
|
A:HIS38
|
4.4
|
0.0
|
1.0
|
H
|
A:ALA23
|
4.6
|
0.0
|
1.0
|
C
|
A:LYS20
|
4.6
|
0.0
|
1.0
|
H
|
A:HIS22
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS18
|
4.7
|
0.0
|
1.0
|
CG
|
A:LYS20
|
4.7
|
0.0
|
1.0
|
HA
|
A:TYR37
|
4.7
|
0.0
|
1.0
|
HG3
|
A:LYS20
|
4.8
|
0.0
|
1.0
|
CA
|
A:LYS20
|
4.8
|
0.0
|
1.0
|
HB2
|
A:LYS20
|
4.8
|
0.0
|
1.0
|
C
|
A:CYS21
|
4.8
|
0.0
|
1.0
|
HE2
|
A:HIS38
|
4.9
|
0.0
|
1.0
|
N
|
A:LYS20
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS21
|
5.0
|
0.0
|
1.0
|
HA
|
A:HIS38
|
5.0
|
0.0
|
1.0
|
HD1
|
A:HIS41
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 2cor
Go back to
Zinc Binding Sites List in 2cor
Zinc binding site 2 out
of 2 in the Solution Structure of the Third Lim Domain of Particularly Interesting New Cys-His Protein
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution Structure of the Third Lim Domain of Particularly Interesting New Cys-His Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn401
b:0.0
occ:1.00
|
SG
|
A:CYS47
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS64
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS67
|
2.4
|
0.0
|
1.0
|
SG
|
A:CYS44
|
2.4
|
0.0
|
1.0
|
HB2
|
A:CYS67
|
2.6
|
0.0
|
1.0
|
CB
|
A:CYS67
|
3.0
|
0.0
|
1.0
|
HB2
|
A:CYS44
|
3.0
|
0.0
|
1.0
|
H
|
A:CYS47
|
3.1
|
0.0
|
1.0
|
H
|
A:CYS64
|
3.1
|
0.0
|
1.0
|
CB
|
A:CYS44
|
3.1
|
0.0
|
1.0
|
HB3
|
A:CYS44
|
3.3
|
0.0
|
1.0
|
HG2
|
A:LYS49
|
3.4
|
0.0
|
1.0
|
H
|
A:CYS67
|
3.4
|
0.0
|
1.0
|
HB3
|
A:ASN46
|
3.6
|
0.0
|
1.0
|
CB
|
A:CYS64
|
3.7
|
0.0
|
1.0
|
HB3
|
A:CYS64
|
3.7
|
0.0
|
1.0
|
CB
|
A:CYS47
|
3.7
|
0.0
|
1.0
|
HB3
|
A:CYS47
|
3.7
|
0.0
|
1.0
|
HB3
|
A:CYS67
|
3.8
|
0.0
|
1.0
|
HD3
|
A:LYS49
|
3.9
|
0.0
|
1.0
|
H
|
A:GLY48
|
3.9
|
0.0
|
1.0
|
N
|
A:CYS64
|
4.0
|
0.0
|
1.0
|
N
|
A:CYS47
|
4.0
|
0.0
|
1.0
|
HB2
|
A:PRO66
|
4.0
|
0.0
|
1.0
|
N
|
A:CYS67
|
4.1
|
0.0
|
1.0
|
HD21
|
A:ASN46
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS67
|
4.1
|
0.0
|
1.0
|
H
|
A:LYS49
|
4.3
|
0.0
|
1.0
|
CA
|
A:CYS64
|
4.4
|
0.0
|
1.0
|
H
|
A:ASN46
|
4.4
|
0.0
|
1.0
|
CG
|
A:LYS49
|
4.4
|
0.0
|
1.0
|
CA
|
A:CYS47
|
4.5
|
0.0
|
1.0
|
HB3
|
A:TYR63
|
4.5
|
0.0
|
1.0
|
O
|
A:CYS64
|
4.5
|
0.0
|
1.0
|
HB2
|
A:CYS47
|
4.5
|
0.0
|
1.0
|
HB2
|
A:CYS64
|
4.5
|
0.0
|
1.0
|
CD
|
A:LYS49
|
4.5
|
0.0
|
1.0
|
HA
|
A:CYS67
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS44
|
4.6
|
0.0
|
1.0
|
HD2
|
A:LYS49
|
4.6
|
0.0
|
1.0
|
CB
|
A:ASN46
|
4.6
|
0.0
|
1.0
|
HD23
|
A:LEU51
|
4.7
|
0.0
|
1.0
|
HD2
|
A:TYR63
|
4.7
|
0.0
|
1.0
|
HA
|
A:TYR63
|
4.7
|
0.0
|
1.0
|
N
|
A:GLY48
|
4.8
|
0.0
|
1.0
|
C
|
A:CYS64
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS44
|
4.9
|
0.0
|
1.0
|
HD2
|
A:PRO66
|
4.9
|
0.0
|
1.0
|
H
|
A:ALA45
|
4.9
|
0.0
|
1.0
|
H
|
A:HIS68
|
5.0
|
0.0
|
1.0
|
HG3
|
A:LYS49
|
5.0
|
0.0
|
1.0
|
ND2
|
A:ASN46
|
5.0
|
0.0
|
1.0
|
HG2
|
A:PRO66
|
5.0
|
0.0
|
1.0
|
|
Reference:
X.R.Qin,
T.Nagashima,
F.Hayashi,
S.Yokoyama.
Solution Structure of the Third Lim Domain of Particularly Interesting New Cys-His Protein To Be Published.
Page generated: Wed Oct 16 22:27:58 2024
|