Zinc in PDB 1zw8: Solution Structure of A ZAP1 Zinc-Responsive Domain Provides Insights Into Metalloregulatory Transcriptional Repression in Saccharomyces Cerevisiae
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution Structure of A ZAP1 Zinc-Responsive Domain Provides Insights Into Metalloregulatory Transcriptional Repression in Saccharomyces Cerevisiae
(pdb code 1zw8). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Solution Structure of A ZAP1 Zinc-Responsive Domain Provides Insights Into Metalloregulatory Transcriptional Repression in Saccharomyces Cerevisiae, PDB code: 1zw8:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 1zw8
Go back to
Zinc Binding Sites List in 1zw8
Zinc binding site 1 out
of 2 in the Solution Structure of A ZAP1 Zinc-Responsive Domain Provides Insights Into Metalloregulatory Transcriptional Repression in Saccharomyces Cerevisiae
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution Structure of A ZAP1 Zinc-Responsive Domain Provides Insights Into Metalloregulatory Transcriptional Repression in Saccharomyces Cerevisiae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn66
b:0.0
occ:1.00
|
NE2
|
A:HIS23
|
2.0
|
0.0
|
1.0
|
NE2
|
A:HIS28
|
2.0
|
0.0
|
1.0
|
SG
|
A:CYS10
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS5
|
2.3
|
0.0
|
1.0
|
CD2
|
A:HIS28
|
3.0
|
0.0
|
1.0
|
CE1
|
A:HIS23
|
3.0
|
0.0
|
1.0
|
CD2
|
A:HIS23
|
3.0
|
0.0
|
1.0
|
CE1
|
A:HIS28
|
3.0
|
0.0
|
1.0
|
HD2
|
A:HIS28
|
3.2
|
0.0
|
1.0
|
HE1
|
A:HIS23
|
3.2
|
0.0
|
1.0
|
HD2
|
A:HIS23
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS10
|
3.3
|
0.0
|
1.0
|
HE1
|
A:HIS28
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS10
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS5
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS10
|
3.4
|
0.0
|
1.0
|
HB2
|
A:CYS5
|
3.5
|
0.0
|
1.0
|
HB2
|
A:TRP7
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS5
|
3.6
|
0.0
|
1.0
|
HG
|
A:LEU24
|
3.7
|
0.0
|
1.0
|
HD21
|
A:LEU20
|
4.0
|
0.0
|
1.0
|
ND1
|
A:HIS23
|
4.1
|
0.0
|
1.0
|
ND1
|
A:HIS28
|
4.1
|
0.0
|
1.0
|
CG
|
A:HIS28
|
4.1
|
0.0
|
1.0
|
CG
|
A:HIS23
|
4.1
|
0.0
|
1.0
|
HD13
|
A:LEU20
|
4.2
|
0.0
|
1.0
|
HB2
|
A:GLU12
|
4.4
|
0.0
|
1.0
|
HA
|
A:LEU24
|
4.4
|
0.0
|
1.0
|
CB
|
A:TRP7
|
4.4
|
0.0
|
1.0
|
CG
|
A:TRP7
|
4.5
|
0.0
|
1.0
|
O
|
A:GLU12
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS10
|
4.7
|
0.0
|
1.0
|
H
|
A:GLU12
|
4.7
|
0.0
|
1.0
|
CD1
|
A:TRP7
|
4.7
|
0.0
|
1.0
|
H
|
A:TRP7
|
4.8
|
0.0
|
1.0
|
HB3
|
A:ASP27
|
4.8
|
0.0
|
1.0
|
CG
|
A:LEU24
|
4.8
|
0.0
|
1.0
|
HB3
|
A:TRP7
|
4.8
|
0.0
|
1.0
|
CA
|
A:CYS5
|
4.8
|
0.0
|
1.0
|
HD21
|
A:LEU24
|
4.9
|
0.0
|
1.0
|
OD2
|
A:ASP27
|
4.9
|
0.0
|
1.0
|
HD1
|
A:TRP7
|
4.9
|
0.0
|
1.0
|
HD13
|
A:LEU24
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS10
|
4.9
|
0.0
|
1.0
|
CD2
|
A:TRP7
|
5.0
|
0.0
|
1.0
|
HD1
|
A:HIS23
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 1zw8
Go back to
Zinc Binding Sites List in 1zw8
Zinc binding site 2 out
of 2 in the Solution Structure of A ZAP1 Zinc-Responsive Domain Provides Insights Into Metalloregulatory Transcriptional Repression in Saccharomyces Cerevisiae
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution Structure of A ZAP1 Zinc-Responsive Domain Provides Insights Into Metalloregulatory Transcriptional Repression in Saccharomyces Cerevisiae within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn67
b:0.0
occ:1.00
|
NE2
|
A:HIS60
|
2.0
|
0.0
|
1.0
|
NE2
|
A:HIS65
|
2.0
|
0.0
|
1.0
|
SG
|
A:CYS47
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS42
|
2.3
|
0.0
|
1.0
|
HB3
|
A:PHE49
|
2.6
|
0.0
|
1.0
|
CD2
|
A:HIS65
|
3.0
|
0.0
|
1.0
|
CD2
|
A:HIS60
|
3.0
|
0.0
|
1.0
|
CE1
|
A:HIS60
|
3.0
|
0.0
|
1.0
|
CE1
|
A:HIS65
|
3.0
|
0.0
|
1.0
|
HD2
|
A:HIS65
|
3.2
|
0.0
|
1.0
|
HD2
|
A:HIS60
|
3.2
|
0.0
|
1.0
|
HB3
|
A:CYS47
|
3.2
|
0.0
|
1.0
|
HE1
|
A:HIS60
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS47
|
3.3
|
0.0
|
1.0
|
HE1
|
A:HIS65
|
3.3
|
0.0
|
1.0
|
HB2
|
A:PHE49
|
3.4
|
0.0
|
1.0
|
CB
|
A:PHE49
|
3.5
|
0.0
|
1.0
|
HB2
|
A:CYS47
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS42
|
3.5
|
0.0
|
1.0
|
HB2
|
A:CYS42
|
3.6
|
0.0
|
1.0
|
HE3
|
A:TRP44
|
3.6
|
0.0
|
1.0
|
HB3
|
A:CYS42
|
3.7
|
0.0
|
1.0
|
HB2
|
A:TRP44
|
3.7
|
0.0
|
1.0
|
H
|
A:PHE49
|
3.9
|
0.0
|
1.0
|
ND1
|
A:HIS60
|
4.1
|
0.0
|
1.0
|
CG
|
A:PHE49
|
4.1
|
0.0
|
1.0
|
ND1
|
A:HIS65
|
4.1
|
0.0
|
1.0
|
CG
|
A:HIS60
|
4.1
|
0.0
|
1.0
|
CG
|
A:HIS65
|
4.1
|
0.0
|
1.0
|
HD1
|
A:PHE49
|
4.1
|
0.0
|
1.0
|
CE3
|
A:TRP44
|
4.2
|
0.0
|
1.0
|
HB2
|
A:GLN64
|
4.2
|
0.0
|
1.0
|
CD1
|
A:PHE49
|
4.4
|
0.0
|
1.0
|
HG12
|
A:ILE61
|
4.5
|
0.0
|
1.0
|
HA
|
A:ILE61
|
4.5
|
0.0
|
1.0
|
HB3
|
A:GLN64
|
4.5
|
0.0
|
1.0
|
N
|
A:PHE49
|
4.7
|
0.0
|
1.0
|
CA
|
A:PHE49
|
4.7
|
0.0
|
1.0
|
CB
|
A:TRP44
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS47
|
4.7
|
0.0
|
1.0
|
CD2
|
A:TRP44
|
4.8
|
0.0
|
1.0
|
CZ3
|
A:TRP44
|
4.8
|
0.0
|
1.0
|
HZ3
|
A:TRP44
|
4.8
|
0.0
|
1.0
|
CB
|
A:GLN64
|
4.9
|
0.0
|
1.0
|
CA
|
A:CYS42
|
4.9
|
0.0
|
1.0
|
HB3
|
A:TRP44
|
4.9
|
0.0
|
1.0
|
HD1
|
A:HIS60
|
5.0
|
0.0
|
1.0
|
|
Reference:
Z.Wang,
L.S.Feng,
V.Matskevich,
K.Venkataraman,
P.Parasuram,
J.H.Laity.
Solution Structure of A ZAP1 Zinc-Responsive Domain Provides Insights Into Metalloregulatory Transcriptional Repression in Saccharomyces Cerevisiae. J.Mol.Biol. V. 357 1167 2006.
ISSN: ISSN 0022-2836
PubMed: 16483601
DOI: 10.1016/J.JMB.2006.01.010
Page generated: Wed Oct 16 21:23:30 2024
|